dsl2_version: using yaml file and adding diamond ultra sensitive option (2a39e3fd) · Commits · GEAPSI-Bioinfo / pipeline / specifics_syntenyMCScanX · GitLab

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2a39e3fd

Commit 2a39e3fd authored 3 years ago by Baptiste Imbert

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dsl2_version: using yaml file and adding diamond ultra sensitive option

parent 9d96216f

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1 merge request!1dsl2_version: fix for psonic; psonic does not support gff gene not in...

Changes 12

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modules/checkGFF.nf 1 addition, 1 deletion

modules/checkGFF.nf
modules/extractCDS.nf 1 addition, 1 deletion

modules/extractCDS.nf
modules/getLongestIsoform.nf 1 addition, 1 deletion

modules/getLongestIsoform.nf
modules/keepProtInOG.nf 1 addition, 1 deletion

modules/keepProtInOG.nf
modules/mutateBlastIDs.nf 1 addition, 1 deletion

modules/mutateBlastIDs.nf
modules/parseGFF.nf 1 addition, 1 deletion

modules/parseGFF.nf
modules/parseN0.nf 1 addition, 1 deletion

modules/parseN0.nf
modules/runOrthoFinder.nf 18 additions, 8 deletions

modules/runOrthoFinder.nf
modules/translateCDS.nf 1 addition, 1 deletion

modules/translateCDS.nf
nextflow.config 3 additions, 7 deletions

nextflow.config
synteny_env.yaml 13 additions, 0 deletions

synteny_env.yaml
synteny_pipeline.nf 1 addition, 1 deletion

synteny_pipeline.nf

with 43 additions and 24 deletions

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