GraphstatsR 
A shiny app allowing users to generate advanced interactive graphics and statistical tests.
Online instance here: https://graphstatsr.sk8.inrae.fr/
Prerequisites
R4.3.3 or upper is required (https://pbil.univ-lyon1.fr/CRAN/bin/)
- Linux
sudo apt-get install r-base git libssl-dev cmake libcurl4-openssl-dev libgmp3-dev libmpfr-dev zlib1g-dev- Windows
Installation
- In R console: You can install the released version of graphstats from this repository with:
install.packages("renv")
options(renv.config.gitlab.host = "https://forgemia.inra.fr")
renv::install("gitlab::etienne.rifa/graphstats@master")
To run Shiny app in R
# To update app
remotes::install_gitlab(repo = "etienne.rifa/graphstats", host = "forgemia.inra.fr", upgrade = FALSE)
# To run app
library(graphstatsr)
graphstatsr::run_app()Toy dataset
Features table and metadata files are available in the dataset folder to test Graphstats. (inst/dataset in the git repo)
dir( system.file("dataset/", package = "graphstatsr") )
# "features_quanti_data.csv" "metadata_file.csv" # for Easy Stats
# "isoplot_quantification_table.csv" "isoplot_metadata.csv" # for IsoPlot