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Commit 820be647 authored by Alexis Mergez's avatar Alexis Mergez
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Update pggb.def

Changed gfaffix installation
parent 5b8c7626
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Tags v2.1.3b
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Pipeline #165079 passed
...@@ -92,11 +92,14 @@ Stage: build ...@@ -92,11 +92,14 @@ Stage: build
# Installing GFAffix # Installing GFAffix
cd /apps cd /apps
wget --no-check-certificate -c https://github.com/marschall-lab/GFAffix/releases/download/0.1.5b/GFAffix-0.1.5b_linux_x86_64.tar.gz git clone https://github.com/marschall-lab/GFAffix.git \
tar -xzvf GFAffix-0.1.5b_linux_x86_64.tar.gz && cd GFAffix \
mv GFAffix-0.1.5b_linux_x86_64 GFAffix-v0.1.5b && git pull \
mv /apps/GFAffix-v0.1.5b/gfaffix /apps/bin/gfaffix && git checkout d630eb7d9827340f5f292e57cb3cb5e31e6f86f0 \
rm -rf /apps/GFAffix-v0.1.5b && cargo install --force --path . \
&& mv /root/.cargo/bin/gfaffix /apps/bin/gfaffix \
&& cd ../ \
&& rm -rf GFAffix
# Installing MultiQC # Installing MultiQC
pip install multiqc==1.18 pip install multiqc==1.18
......
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