Update file README.md

README.md

@@ -25,7 +25,6 @@ A second version exists now and the functions  are now in Sources_v2.
 The differences between both are described in the document
 `Version1_vs_Version2.pdf`  available at the root of the directory DiCoExpress
 
-
 ## How to install DiCoExpress? 
 
 After downloading DiCoExpress either as a zip file or using the command "git clone" in Shell.
@@ -34,9 +33,7 @@ After downloading DiCoExpress either as a zip file or using the command "git clo
 
 ``source_path = "Sources_v2/"``
 
-``source(paste0("../",source_path,"Load_Functions.R"))``
-
-``Load_Functions(source_path)``
+``source(paste0("../",source_path,"Install_Packages.R"))``
 
 source_path is the name of the folder containing the Source code. 
 You can choose to use version 1 by setting source_path = "Sources_v1".
@@ -46,6 +43,7 @@ the logical value “TRUE” will be printed on the R Console pane for each pack
 If the logical value “FALSE” is printed, you will need to check the error messages 
 in the Console pane to find a solution.
 
+The `DiCoExpress_TP.html` file is a tutorial explaining step by step an analysis. 
 
 ## Organization of the Git Repository
 
@@ -53,13 +51,13 @@ The Git repository is composed of DiCoExpress and pdf files.
 
 * DiCoExpress consists of several directories :
 
-    - **Data/**: contains the input data required to run an analysisDiCoExpress
+    - **Data/**: contains the input data required to run an analysis DiCoExpress
 
     - **Sources_v1/** and **Sources_v2/**: host the source code of DiCoExpress. Version 2 offers modifications and improvements         compared to version 1, the differences are explained in the `Version1_vs_Version2.pdf` file.
 
 
     - **Template_scripts/**: contains an R script for each project, allowing a semi-automated data analysis where the user is guided. In this directories, `DiCoExpress_TP.R` was designed to facilitate the handling of the tool version v2.
-The script `DiCoExpress_Tutorial_JoVE.R` was designed for the version v1 of DiCoExpress. We decided to remove `DiCoExpress_Brassica_napus.R`. 
+The script `DiCoExpress_Tutorial_JoVE.R` was designed for the version v1 of DiCoExpress. We decided to remove `DiCoExpress_Brassica_napus.R`, which is not more relevant. 
     
     - **Results/**: contains a subdirectory per project with all the results of the different steps.