Skip to content

implement Gprofiler

Add "Send list to Gprofiler" as it is done for "Enrichr"

this is an example of URL to send a list of genes:

https://biit.cs.ut.ee/gprofiler/gost?query=ENSRNOG00000001434%0AENSRNOG00000005413%0AENSRNOG00000019205

Here no organism is specified, so the user must select the appropriate org in the field because default is human.

Here an example of a full params url :

https://biit.cs.ut.ee/gprofiler/gost?organism=rnorvegicus&query=ENSRNOG00000001434%0AENSRNOG00000005413%0AENSRNOG00000019205%0AENSRNOG00000050220%0AENSRNOG00000002115&ordered=false&all_results=false&no_iea=false&combined=false&measure_underrepresentation=false&domain_scope=annotated&significance_threshold_method=g_SCS&user_threshold=0.05&numeric_namespace=ENTREZGENE_ACC&sources=GO:MF,GO:CC,GO:BP,KEGG,TF,REAC,MIRNA,HPA,CORUM,HP,WP&background=&highlight=true&no_evidences=false

Also, there is a Rpackage:

https://cran.r-project.org/web/packages/gprofiler2/vignettes/gprofiler2.html