Problème matcher2.32 : Segmentation fault
Actuellement, Repet-snakemake utilise matcher 2.32 qui est intégré dans l'image singularity de Repet.
Quand j'ai lancé PASTEC, matcher est sorti en erreur au niveau du detect features pour les profiles hmm. J'ai un segmentation fault.
J'ai récupéré le fichier qui posait problème et j'ai lancé la commande que PASTEC utilise.
(base) [centos@vm-repetv3 HMM]$ singularity exec /mnt/volume_data_mariene/test_tiny_pea/REPET-snakemake/Singularity/REPET.sif matcherThreads2.32 -m batch_12_tr.hmmScanOutTab_Profiles.align -j -E 10 -L 0 -v 3
Beginning Matcher (version 2.32)
=============================================
JOIN parameter:
-----------------
Match input file: batch_12_tr.hmmScanOutTab_Profiles.align
Output prefix: batch_12_tr.hmmScanOutTab_Profiles.align
Subject bank: <not set>
Query bank: <not set>
e-value filter: 10
identity filter: 0
length filter: 0
nb thread: 1
Join fragments
Gap penalty to join sequence:0.05
Distance penalty to join sequence:0.2
Authorized overlap to join sequence:20
Identity tolerance:2
=============================================
MATCHER parameter:
-----------------
Filter conflicting subjects before joining
No Filtering of conflicting subjects after joining
No merge option enabled
nb sets=1
=============================================
Load the matches...
nb of matches: 0
nb of distinct queries: 0
nb of distinct subjects: 0
Matches were loaded.
list size=0
...run on 1 sets
Split path in 1 sets ...
set size=0 from 0 query sequences
Segmentation faultLe fichier ressemble à ceci :
(base) [centos@vm-repetv3 HMM]$ more batch_12_tr.hmmScanOutTab_Profiles.align
Blaster-b-R6-Map20 7270 7404 PF18799.4_LPD5_NA_OTHER_28.6 111 67 120 3 0.0
Blaster-b-R6-Map20 6118 6249 PF18799.4_LPD5_NA_OTHER_28.6 111 68 300 2 0.0
Blaster-b-R6-Map20 21168 21308 PF18799.4_LPD5_NA_OTHER_28.6 111 61 250 2 0.0
Blaster-b-R6-Map20 13980 14105 PF18799.4_LPD5_NA_OTHER_28.6 109 68 1100 0 0.0
Blaster-b-R6-Map20 17243 17374 PF18799.4_LPD5_NA_OTHER_28.6 111 68 300 2 0.0
Blaster-b-R6-Map20 15029 15160 PF18799.4_LPD5_NA_OTHER_28.6 111 68 1100 0 0.0Merci d'avance