unavble to perform tukey analysis on mcqr integration
Bug report
trying to perform tkuey analysis on mcqr interface result as an error due to change in argument name in R function
Version of X!TandemPipeline
(Which version of X!TandemPipeline bug) 1.2.9
Error message
R has been stopped due to an error!! Checking validity cmcq.protlist object is valid Info : The stade parameter is significant for 2794 proteins out of 2854 (padj_stade < 0.05). Info : Selects 2794 proteins from 2854 Error in mcq.compute.tukey(XICAB_ANOVA, flist = c("stade"), protlist = XICAB_PROTEINS_selected_stade) : unused argument (protlist = XICAB_PROTEINS_selected_stade) Calls: capture.output -> withVisible Execution halted
File used
/gorgone/pappso/moulon/users/thierry/20251010_colombie_41/QC
## Steps to reproduce (How one can reproduce the issue - very important) launch mcqr analysis in i2 masschroq and try tukey computation
What is the expected correct behavior?
Optional
Relevant logs and/or screenshots
(Paste any relevant logs - please use code blocks (```) to format console output, logs, and code as it's very hard to read otherwise.)
Possible fixes
(If you can, link to the line of code that might be responsible for the problem) replacing protlist argument by selected_list