Stop 16 MuSICA after "... reached end of phenology file" and floating-point exceptions
script_test.R musica_veg1.nmlmusica_soil.nmlmusica_in_Blois.ncmusica.nml
musica.nml dans le même dossier que script_test.R musica_in_Blois.nc, musica_veg1.nml et soil_musica.nml dans /in_files
✔ Read musica.nml [30ms]
✔ Write musica.nml [19ms]
✔ Read soil.nml [19ms]
✔ Write soil.nml [19ms]
✔ Read parameter for species musica_veg1 [34ms]
✔ Write allometry for species musica_veg1 [33ms]
✔ Write namelist for species musica_veg1
✔ Write phenology for species musica_veg1 [30ms]
✔ Setup temporary directory [237ms]
bash: cannot set terminal process group (287841): Inappropriate ioctl for device
bash: no job control in this shell
--------------------------------------------------------------------
Mu - ltilayer
S - imulator of the
I - nteractions between a vegetation
C - anopy and the
A - tmosphere
Copyright: INRA 2011-2018
Main author: J Ogee
Technical support: J Ogee (jerome.ogee@inra.fr)
TERMS AND CONDITIONS OF USE:
This software is copyrighted. If you intend to use it, please
first read and agree with the "terms and conditions of use"
provided with the software.
You must also inform the main author (Jerome Ogee) of your study
to avoid any conflict or overlap between users and
to keep track of the different users/applications.
--------------------------------------------------------------------
--> file names
forcing file: ./forcing.nc
history file: ./out.nc
history daily file:
restart (in) file:
restart (out) file: MuSICA_restout.nc
forcing timestep: 3600.0000000000000
nb of air layers = 15
nb of vegetation layers = 10
air grid type is irregular
n_soil_layer = 15
n_leaf_age = 3
* Initialisation1 of module mo_soil_transfer
soil grid type is irregular
* Initialisation1 of module mo_allocation
C_alloc_method: musica_original
* Initialisation1 of module mo_snow
* Initialisation1 of module mo_template
Opening history file: ./out.nc
Opening restart (out) file: MuSICA_restout.nc
Reading NetCDF variable list: variables.csv
Initialize2
Setup2 of model run
number of time steps (ntime) = 13847
reference level in forcing file (m) = 30.00
user-specified reference level is different and equal to 24.00
time step of the forcing = 3600 seconds
site latitude in forcing file = 47.57 degrees
site longitude in forcing file = 1.26 degrees
time origine (yr,jd) = 2021 1
* Initialisation2 of module mo_musica
* Initialisation2 of module mo_phenology
* Initialisation2 of module mo_allometry
* Initialisation2 of module mo_radia_transfer
* Initialisation2 of module mo_leaf_level_fluxes
* Initialisation2 of module mo_rain_interception
* Initialisation2 of module mo_soil_transfer
* Initialisation2 of module mo_turbulent_transfer
* Initialisation2 of module mo_allocation
* Initialisation2 of module mo_snow
* Initialisation2 of module mo_template
--> Call MuSICA at each time step
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... reached end of phenology file for species musica_veg1
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO IEEE_UNDERFLOW_FLAG IEEE_DENORMAL
STOP 16
✔ Run MuSICA [9.1s]
Error in { :
task 1 failed - "task 1 failed - "missing value where TRUE/FALSE needed""
In addition: Warning messages:
1: In max(veget_height_top$veget_height_top) :
no non-missing arguments to max; returning -Inf
2: In max(veget_height_top$veget_height_top) :
no non-missing arguments to max; returning -Inf
✖ Get MuSICA output as data.frame [229ms]Edited by Rémi Lemaire-Patin