N

network inference

This project is the source repository of the CRAN package 'RNAseqNet' https://cran.r-project.org/package=RNAseqNet.

This package infers a log-linear Poisson Graphical Model with an auxiliary dataset. Hot-deck multiple imputation method is used to improve the reliability of the inference with an auxiliary dataset DOI:10.1093/bioinformatics/btx819. The package also implements standard log-linear Poisson GM (without missing data) <a href"https://dx.doi.org/10.1109/BIBM.2012.6392619">DOI:10.1109/BIBM.2012.6392619 and the StARS criterion to help with the choice of the regularization parameter.