R

R-package

F3MR is a R package that help to analyze food microbiome omics data based on dedicated and curated metabolic modules based on extensive literature review. It belongs to F3M software suite developed by INRAE Food Microbial Ecology lab

https://metatoul.pages.mia.inra.fr/graphstats

https://umrf.pages.mia.inra.fr/ranomaly/

shinySbm is a package containing a shiny application. This application is build for network analysis based on the sbm package made by Chiquet J, Donnet S and Barbillon P (2023) CRAN. It allow to apply and explore the outputs of a Stochastic Block Model. It is useful if you want to analyse your data (could be adjacency matrix or edges list) without R language knowledge or to learn the basic lines of the sbm package.

Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/

Estimate the spread-rate of epidemics https://umr-astre.pages.mia.inra.fr/spreadrate/