H

Hi-C

An hybrid tool to accurately scaffold genomes using Hi-C and Deep-Learning.

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

Juicer workflow, but compressed :) (Using BAM instead of SAM)