Skip to content
Release v1.2.0: BigWig Comparison Feature

Major feature release with BigWig statistical comparison capabilities:

Features:
- Statistical comparison between groups of BigWig files using deeptools bigwigCompare
- Support for log2ratio, subtract, and ratio comparison methods
- Treatment vs control comparisons via samplesheet design
- Comprehensive test suite and documentation
- Input validation utilities with improved robustness
- Enhanced pipeline architecture with modular design

Local Development Support:
- local.config for easy local testing and development
- Override HPC settings for local execution
- Windows-compatible file operations
- Reduced resource requirements for development

Documentation Updates:
- Complete user guides and API documentation
- Fixed CI/CD build errors and tool references
- Updated workflow diagrams and descriptions
- Local development setup guide

Technical Improvements:
- Modular COMPARE_BIGWIG module with clean separation
- Robust input validation and error reporting
- Organized testing framework with Python pytest integration
- Updated from wiggletools to deeptools throughout