Tags

* Add Temporary system file option to improve flexibility for short-lived operations
* Add runOption item consolidating all runModel configuration settings
* Enhance scoring performance methods for better accuracy and speed
* Improve outputModel analysis with cleaner and more insightful metrics
* Fix nitrogen routines — now reactivated and functioning as intended
* Add new "Get Started" guide to streamline onboarding and confusion
* Improve Function-level documentation for better developer clarity
* Fix Various calculation bugs (biomass, stress, LAI—you know, the usual chaos)
* Refactored Parallelization methods for smarter, faster execution

- Improved package documentation with clearer examples, detailed references, and sharper details.
 - Implemented a brand-new method for calculating HI (Harvest Index).
 - Upgraded the logistic function to account for cumulative stress over time.
 - Enhanced performance criteria selection for a better, faster, stronger evaluation.
 - Rewritten the package structure—now more modular than ever.
 - Rewrote display functions for a lot more flexibility.
 - Fixed several poorly used or entirely unused variables/parameters.
 - Added a structured, automated environment for each simulation.

- Revamp the parameter file system and introduce pre-configuration files for user, plant, soil, and nitrogen.
- Implement a Docker environment and set up a Visual Studio Code (VSCode) settings structure.
- Enhance data loading and saving processes.
- Resolve issues with the deactivated irrigation calendar.
- Refine criterion calculations and improve score calculations by considering all available observed data.

- Rework LAI & TDM calculation functions
- Re-organise All description functions (dev-plante, water-balance, yield & nitrogen) 
- Unify Calibration and Simulation functions
- Add functions to save output model (daily & season)
- Add a new vignet for sensivity paramter test
- Add Criteria functions (NSE, KGE, RMSE, MAE, IA) & also scoring (sensivity parameter test)
- Clean old unused functions & descriptions
- Add new usefull water reservoir graph
- Add a parallel loop function for runModel (usable only on windows, future.apply)

- Add new method S3 for calibration, simulation & describe bio process
- Add or rework graphics for ouput model
- clean old unused functions
- fix  some wrong writing that cause wrong LAI/TDM calculations
- Add best describe for all the functions
- Remove OAD use to create an other module
- Add an new vignet for Ex-Ante use

Add to OptirrigCore Ex-post & OAD options

- Extract common functions From all Optirrig version
- Take account of Ex-Post, Ex-Anté and OAD types of use
- integrated into PilotR the ability to select calculation functions for bio-physical processes, in order to take account of family of plants
- See how it possible to integrate some other specifics parrameters