From 169b4b604e58bede6585e944b540e616dcce45e1 Mon Sep 17 00:00:00 2001
From: LouisonF <fresnaislouison@gmail.com>
Date: Wed, 11 May 2022 09:08:13 +0200
Subject: [PATCH 01/12] parallelize several GetShortestPath loops
---
.../computation/connect/ShortestPath.java | 95 ++++++++++---------
1 file changed, 48 insertions(+), 47 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index 1f3a5eeae..c96282ebd 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -57,10 +57,10 @@ import fr.inrae.toulouse.metexplore.met4j_core.biodata.BioEntity;
* @version $Id: $Id
*/
public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGraph<V ,E>>{
-
+
/** The graph. */
public final G g;
-
+
/**
* Instantiates a new shortest paths computor.
*
@@ -69,7 +69,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
public ShortestPath(G g) {
this.g=g;
}
-
+
/**
* compute the shortest paths (or lightest paths if the graph is weighted) between 2 nodes
*
@@ -86,29 +86,29 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
if(!g.containsVertex(end)){
throw(new IllegalArgumentException("Error: end node "+end.getId()+" not found in graph"));
}
-
+
HashMap<V,E> incoming = new HashMap<>();
HashMap<V,Double> distMap = new HashMap<>();
Set<V> unseen = new HashSet<>();
Set<V> seen = new HashSet<>();
-
+
//init dist from start
for(V v : g.vertexSet()){
distMap.put(v, Double.POSITIVE_INFINITY);
}
-
+
unseen.add(start);
distMap.put(start,0.0);
-
+
while (!unseen.isEmpty()) {
-
+
//get the closest node from the start vertex
V n = getNearest(distMap,unseen);
unseen.remove(n);
seen.add(n);
-
-
+
+
//add current nodes's successor to the list of node to process, if not already seen
// skip outgoing edges from reaction already used in path
for(E e : g.outgoingEdgesOf(n)){
@@ -126,7 +126,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}
}
if(!incoming.containsKey(end)) return null;
-
+
//backtracking
double weight = 0.0;
List<E> sp = new ArrayList<>();
@@ -142,8 +142,8 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
Collections.reverse(sp);
return new BioPath<>(g, start, end, sp, weight);
}
-
-
+
+
/**
* compute the shortest paths (or lightest paths if the graph is weighted) between 2 nodes as if the graph was undirected
*
@@ -160,28 +160,28 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
if(!g.containsVertex(end)){
throw(new IllegalArgumentException("Error: end node "+end.getId()+" not found in graph"));
}
-
+
HashMap<V,E> incoming = new HashMap<>();
HashMap<V,Double> distMap = new HashMap<>();
Set<V> unseen = new HashSet<>();
Set<V> seen = new HashSet<>();
-
+
//init dist from start
for(V v : g.vertexSet()){
distMap.put(v, Double.POSITIVE_INFINITY);
}
-
+
unseen.add(start);
distMap.put(start,0.0);
-
+
while (!unseen.isEmpty()) {
-
+
//get the closest node from the start vertex
V n = getNearest(distMap,unseen);
unseen.remove(n);
seen.add(n);
-
-
+
+
//add current nodes's successor to the list of node to process, if not already seen
// skip outgoing edges from reaction already used in path
for(E e : g.outgoingEdgesOf(n)){
@@ -212,7 +212,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}
}
if(!incoming.containsKey(end)) return null;
-
+
//backtracking
double weight = 0.0;
List<E> sp = new ArrayList<>();
@@ -232,7 +232,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
Collections.reverse(sp);
return new BioPath<>(g, start, end, sp, weight);
}
-
+
/**
* get the nearest vertex to a given seed node from a list of node to check
*
@@ -252,8 +252,8 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}
return nearest;
}
-
-
+
+
/**
* compute the list of edges from the union of all shortest paths between all nodes in a given set
*
@@ -263,7 +263,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
public List<BioPath<V,E>> getShortestPathsUnionList(Set<V> nodeOfInterest){
return getShortestPathsUnionList(nodeOfInterest,nodeOfInterest);
}
-
+
/**
* compute the list of edges from the union of all shortest paths between sources and target nodes
@@ -274,17 +274,18 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
*/
public List<BioPath<V,E>> getShortestPathsUnionList(Set<V> startNodes, Set<V> targetNodes){
ArrayList<BioPath<V,E>> shortest = new ArrayList<>();
- for(V start : startNodes){
+ // for(V start : startNodes){
+ startNodes.parallelStream().forEach(start -> {
for(V end : targetNodes){
if(start!=end){
BioPath<V, E> toAdd = getShortest(start, end);
if(toAdd!=null) shortest.add(toAdd);
}
}
- }
+ });
return shortest;
}
-
+
/**
* Compute a graph where each edge correspond to an existing path between source and target
*
@@ -303,7 +304,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
cg.addVertex(v);
}
}
- for(V v1 : sources){
+ sources.parallelStream().forEach(v1 -> {
for(V v2: targets){
if(v1!=v2){
BioPath<V,E> sp = this.getShortest(v1, v2);
@@ -320,15 +321,15 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}else{
cg.setEdgeWeight(e,sp.getLength());
}
-
+
}
}
}
- }
+ });
return cg;
}
-
+
/**
* compute for each node in the first list, the minimum path length to be reached by nodes in the second set
*
@@ -357,7 +358,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}
return minSpDist;
}
-
+
/**
* compute for each node in the first list, the average minimum path length to be reached by nodes in the second set
*
@@ -385,23 +386,23 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}
return avgSpDist;
}
-
+
/**
* return all the shortest path in the given graph.
* @return all the shortest path in the given graph.
*/
- public Set<BioPath<V,E>> getAllShortestPaths(){
- HashSet<BioPath<V, E>> paths = new HashSet<>();
-
- for(V v1 : g.vertexSet()){
- for(V v2 : g.vertexSet()){
- if(v1!=v2){
- BioPath<V, E> sp = this.getShortest(v1, v2);
- if(sp!=null) paths.add(sp);
- }
- }
- }
- return paths;
- }
+ public Set<BioPath<V,E>> getAllShortestPaths(){
+ HashSet<BioPath<V, E>> paths = new HashSet<>();
+ Set<V> v_set = g.vertexSet();
+ v_set.parallelStream().forEach(v1 -> {
+ for(V v2 : g.vertexSet()){
+ if(v1!=v2){
+ BioPath<V, E> sp = this.getShortest(v1, v2);
+ if(sp!=null) paths.add(sp);
+ }
+ }
+ });
+ return paths;
+ }
}
--
GitLab
From 596804fbdfc50101443f84c9a82479054010046e Mon Sep 17 00:00:00 2001
From: LouisonF <fresnaislouison@gmail.com>
Date: Thu, 12 May 2022 11:28:19 +0200
Subject: [PATCH 02/12] temporary fix to handle variability induced by
parallelstream
---
.../computation/connect/ShortestPath.java | 27 ++++++++++++++-----
1 file changed, 20 insertions(+), 7 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index c96282ebd..0cf054fab 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -392,16 +392,29 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @return all the shortest path in the given graph.
*/
public Set<BioPath<V,E>> getAllShortestPaths(){
- HashSet<BioPath<V, E>> paths = new HashSet<>();
- Set<V> v_set = g.vertexSet();
- v_set.parallelStream().forEach(v1 -> {
- for(V v2 : g.vertexSet()){
- if(v1!=v2){
- BioPath<V, E> sp = this.getShortest(v1, v2);
- if(sp!=null) paths.add(sp);
+ Set<BioPath<V,E>> paths = new HashSet();
+ //Generate pair map
+ HashMap<List<V>,BioPath<V,E>> result_map = new HashMap<>();
+ for(V v1 : g.vertexSet())
+ {
+ for(V v2 : g.vertexSet()) {
+ List<V> tmp_set = new ArrayList();
+ tmp_set.add(v1);
+ tmp_set.add(v2);
+ if(v1!=v2) {
+ result_map.put(tmp_set, null);
}
}
+ }
+ result_map.entrySet()
+ .parallelStream()
+ .forEach(entry -> {
+ BioPath<V, E> sp = this.getShortest(entry.getKey().get(0), entry.getKey().get(1));
+ result_map.replace(entry.getKey(), sp);
});
+ for(BioPath<V, E> bp : result_map.values()) {
+ if(bp != null) paths.add(bp);
+ }
return paths;
}
--
GitLab
From 7b68aa376d20e9b15c8cf0c02aab6a72d86c02d8 Mon Sep 17 00:00:00 2001
From: LouisonF <fresnaislouison@gmail.com>
Date: Thu, 12 May 2022 11:45:00 +0200
Subject: [PATCH 03/12] Revert "temporary fix to handle variability induced by
parallelstream"
This reverts commit 596804fbdfc50101443f84c9a82479054010046e.
---
.../computation/connect/ShortestPath.java | 27 +++++--------------
1 file changed, 7 insertions(+), 20 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index 0cf054fab..c96282ebd 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -392,29 +392,16 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @return all the shortest path in the given graph.
*/
public Set<BioPath<V,E>> getAllShortestPaths(){
- Set<BioPath<V,E>> paths = new HashSet();
- //Generate pair map
- HashMap<List<V>,BioPath<V,E>> result_map = new HashMap<>();
- for(V v1 : g.vertexSet())
- {
- for(V v2 : g.vertexSet()) {
- List<V> tmp_set = new ArrayList();
- tmp_set.add(v1);
- tmp_set.add(v2);
- if(v1!=v2) {
- result_map.put(tmp_set, null);
+ HashSet<BioPath<V, E>> paths = new HashSet<>();
+ Set<V> v_set = g.vertexSet();
+ v_set.parallelStream().forEach(v1 -> {
+ for(V v2 : g.vertexSet()){
+ if(v1!=v2){
+ BioPath<V, E> sp = this.getShortest(v1, v2);
+ if(sp!=null) paths.add(sp);
}
}
- }
- result_map.entrySet()
- .parallelStream()
- .forEach(entry -> {
- BioPath<V, E> sp = this.getShortest(entry.getKey().get(0), entry.getKey().get(1));
- result_map.replace(entry.getKey(), sp);
});
- for(BioPath<V, E> bp : result_map.values()) {
- if(bp != null) paths.add(bp);
- }
return paths;
}
--
GitLab
From c25f2658619e2dc82e77679efd488a2fe6761ae4 Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Thu, 12 May 2022 14:38:55 +0200
Subject: [PATCH 04/12] parallelised shortest path
getAllShortest return list for consistency with other class methods + improve code reuse.
---
.../centrality/PathBasedCentrality.java | 21 ++-----
.../computation/connect/ShortestPath.java | 59 ++++++++-----------
2 files changed, 31 insertions(+), 49 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/analyze/centrality/PathBasedCentrality.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/analyze/centrality/PathBasedCentrality.java
index 47d34984f..97bde5d77 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/analyze/centrality/PathBasedCentrality.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/analyze/centrality/PathBasedCentrality.java
@@ -36,6 +36,7 @@
package fr.inrae.toulouse.metexplore.met4j_graph.computation.analyze.centrality;
import java.util.HashMap;
+import java.util.HashSet;
import java.util.Map;
import java.util.Set;
@@ -107,11 +108,7 @@ public class PathBasedCentrality<V extends BioEntity,E extends Edge<V>, G extend
* @return the geodesic betweenness
*/
public Map<V, Integer> getGeodesicBetweenness(){
- if(this.allShortestPaths ==null){
- ShortestPath<V, E, G> pathComputor = new ShortestPath<>(g);
- allShortestPaths =pathComputor.getAllShortestPaths();
- }
- return getBetweenness(allShortestPaths);
+ return getBetweenness(this.getAllShortestPaths());
}
/**
@@ -143,11 +140,7 @@ public class PathBasedCentrality<V extends BioEntity,E extends Edge<V>, G extend
* @return the geodesic neighborhood centrality
*/
public Map<V, Integer> getGeodesicNeighborhoodCentrality(){
- if(this.allShortestPaths ==null){
- ShortestPath<V, E, G> pathComputor = new ShortestPath<>(g);
- allShortestPaths =pathComputor.getAllShortestPaths();
- }
- return getNeighborhoodCentrality(allShortestPaths);
+ return getNeighborhoodCentrality(this.getAllShortestPaths());
}
/**
@@ -296,11 +289,7 @@ public class PathBasedCentrality<V extends BioEntity,E extends Edge<V>, G extend
* @return a {@link java.util.Map} object.
*/
public Map<V, Double> getGeodesicCloseness(){
- if(this.allShortestPaths ==null){
- ShortestPath<V, E, G> pathComputor = new ShortestPath<>(g);
- allShortestPaths =pathComputor.getAllShortestPaths();
- }
- return getCloseness(allShortestPaths);
+ return getCloseness(this.getAllShortestPaths());
}
/**
@@ -341,7 +330,7 @@ public class PathBasedCentrality<V extends BioEntity,E extends Edge<V>, G extend
public Set<BioPath<V, E>> getAllShortestPaths() {
if(this.allShortestPaths ==null){
ShortestPath<V, E, G> pathComputor = new ShortestPath<>(g);
- allShortestPaths =pathComputor.getAllShortestPaths();
+ allShortestPaths = new HashSet<>(pathComputor.getAllShortestPaths());
}
return allShortestPaths;
}
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index c96282ebd..6cd0f4455 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -35,13 +35,8 @@
*/
package fr.inrae.toulouse.metexplore.met4j_graph.computation.connect;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.HashSet;
-import java.util.List;
-import java.util.Set;
+import java.util.*;
+import java.util.stream.Collectors;
import fr.inrae.toulouse.metexplore.met4j_graph.core.BioGraph;
import fr.inrae.toulouse.metexplore.met4j_graph.core.BioPath;
@@ -49,6 +44,7 @@ import fr.inrae.toulouse.metexplore.met4j_graph.core.Edge;
import fr.inrae.toulouse.metexplore.met4j_graph.core.compressed.CompressedGraph;
import fr.inrae.toulouse.metexplore.met4j_graph.core.compressed.PathEdge;
import fr.inrae.toulouse.metexplore.met4j_core.biodata.BioEntity;
+import org.jgrapht.alg.util.Pair;
/**
* Class to use the shortest paths in a graph
@@ -273,17 +269,12 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @return the list of edges involved in the shortest path union
*/
public List<BioPath<V,E>> getShortestPathsUnionList(Set<V> startNodes, Set<V> targetNodes){
- ArrayList<BioPath<V,E>> shortest = new ArrayList<>();
- // for(V start : startNodes){
- startNodes.parallelStream().forEach(start -> {
- for(V end : targetNodes){
- if(start!=end){
- BioPath<V, E> toAdd = getShortest(start, end);
- if(toAdd!=null) shortest.add(toAdd);
- }
- }
- });
- return shortest;
+ Collection<Pair<V,V>> pairs = prepareSPcomputation(startNodes,targetNodes);
+ if(pairs.isEmpty()) return new ArrayList<>();
+ return pairs.parallelStream()
+ .map(p -> this.getShortest(p.getFirst(),p.getSecond()))
+ .filter(Objects::nonNull)
+ .collect(Collectors.toList());
}
/**
@@ -304,7 +295,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
cg.addVertex(v);
}
}
- sources.parallelStream().forEach(v1 -> {
+ for(V v1 : sources){
for(V v2: targets){
if(v1!=v2){
BioPath<V,E> sp = this.getShortest(v1, v2);
@@ -325,7 +316,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
}
}
}
- });
+ }
return cg;
}
@@ -391,18 +382,20 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* return all the shortest path in the given graph.
* @return all the shortest path in the given graph.
*/
- public Set<BioPath<V,E>> getAllShortestPaths(){
- HashSet<BioPath<V, E>> paths = new HashSet<>();
- Set<V> v_set = g.vertexSet();
- v_set.parallelStream().forEach(v1 -> {
- for(V v2 : g.vertexSet()){
- if(v1!=v2){
- BioPath<V, E> sp = this.getShortest(v1, v2);
- if(sp!=null) paths.add(sp);
- }
- }
- });
- return paths;
- }
+ public List<BioPath<V,E>> getAllShortestPaths(){
+ return getShortestPathsUnionList(g.vertexSet());
+ }
+
+ private Collection<Pair<V,V>> prepareSPcomputation(Set<V> sources, Set<V> targets){
+ ArrayList<Pair<V,V>> pairs = new ArrayList<>();
+ for(V v1 : sources){
+ for(V v2 : targets){
+ if(v1!=v2){
+ pairs.add(new Pair<>(v1,v2));
+ }
+ }
+ }
+ return pairs;
+ }
}
--
GitLab
From 1287ef2b22c7d30b723a78291d4b16043a447004 Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 10:56:28 +0200
Subject: [PATCH 05/12] switch to jgrapht many-to-many implementation
---
.../computation/connect/ShortestPath.java | 33 +++++++++----------
1 file changed, 15 insertions(+), 18 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index 6cd0f4455..b0db58597 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -44,6 +44,9 @@ import fr.inrae.toulouse.metexplore.met4j_graph.core.Edge;
import fr.inrae.toulouse.metexplore.met4j_graph.core.compressed.CompressedGraph;
import fr.inrae.toulouse.metexplore.met4j_graph.core.compressed.PathEdge;
import fr.inrae.toulouse.metexplore.met4j_core.biodata.BioEntity;
+import org.jgrapht.GraphPath;
+import org.jgrapht.alg.interfaces.ManyToManyShortestPathsAlgorithm;
+import org.jgrapht.alg.shortestpath.DijkstraManyToManyShortestPaths;
import org.jgrapht.alg.util.Pair;
/**
@@ -269,12 +272,18 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @return the list of edges involved in the shortest path union
*/
public List<BioPath<V,E>> getShortestPathsUnionList(Set<V> startNodes, Set<V> targetNodes){
- Collection<Pair<V,V>> pairs = prepareSPcomputation(startNodes,targetNodes);
- if(pairs.isEmpty()) return new ArrayList<>();
- return pairs.parallelStream()
- .map(p -> this.getShortest(p.getFirst(),p.getSecond()))
- .filter(Objects::nonNull)
- .collect(Collectors.toList());
+ DijkstraManyToManyShortestPaths<V,E> spComputor = new DijkstraManyToManyShortestPaths<>(g);
+ ManyToManyShortestPathsAlgorithm.ManyToManyShortestPaths<V, E> paths = spComputor.getManyToManyPaths(startNodes,targetNodes);
+ List<BioPath<V,E>> outputPaths = new ArrayList<>();
+ for(V start : startNodes){
+ for(V end : targetNodes){
+ if(start!=end){
+ GraphPath<V, E> p = paths.getPath(start,end);
+ if(p!=null) outputPaths.add(new BioPath<>(p));
+ }
+ }
+ }
+ return outputPaths;
}
/**
@@ -386,16 +395,4 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
return getShortestPathsUnionList(g.vertexSet());
}
- private Collection<Pair<V,V>> prepareSPcomputation(Set<V> sources, Set<V> targets){
- ArrayList<Pair<V,V>> pairs = new ArrayList<>();
- for(V v1 : sources){
- for(V v2 : targets){
- if(v1!=v2){
- pairs.add(new Pair<>(v1,v2));
- }
- }
- }
- return pairs;
- }
-
}
--
GitLab
From ef0db8ce0383c500caf7ea65c2a7effa2329588b Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 11:13:48 +0200
Subject: [PATCH 06/12] use ShortestPathsUnion in metric closure graph
---
.../computation/connect/ShortestPath.java | 30 +++++++------------
1 file changed, 10 insertions(+), 20 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index b0db58597..5d32a9cfa 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -304,26 +304,16 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
cg.addVertex(v);
}
}
- for(V v1 : sources){
- for(V v2: targets){
- if(v1!=v2){
- BioPath<V,E> sp = this.getShortest(v1, v2);
- if(sp!=null){
- PathEdge<V, E> e = new PathEdge<>(v1, v2, sp);
- cg.addEdge(v1, v2, e);
- if(weighted){
-// double weightSum = 0;
-// for(E edge : sp){
-// weightSum+=g.getEdgeWeight(edge);
-// }
-// cg.setEdgeWeight(e, weightSum);
- cg.setEdgeWeight(e,sp.getWeight());
- }else{
- cg.setEdgeWeight(e,sp.getLength());
- }
-
- }
- }
+ List<BioPath<V,E>> shortestPaths = getShortestPathsUnionList(sources,targets);
+ for(BioPath<V,E> sp : shortestPaths){
+ V v1 = sp.getStartVertex();
+ V v2 = sp.getEndVertex();
+ PathEdge<V, E> e = new PathEdge<>(v1, v2, sp);
+ cg.addEdge(v1, v2, e);
+ if(weighted){
+ cg.setEdgeWeight(e,sp.getWeight());
+ }else{
+ cg.setEdgeWeight(e,sp.getLength());
}
}
--
GitLab
From fd2f09691f1c15a3413012b2424107712d97c56e Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 14:23:46 +0200
Subject: [PATCH 07/12] remove ambiguity from test case + add value check in
shortestpathunion
---
${filename} | 13245 ++++++++++++++++
.../computation/connect/ShortestPath.java | 10 +-
.../met4j_graph/TestShortestPaths.java | 3 +-
3 files changed, 13254 insertions(+), 4 deletions(-)
create mode 100644 ${filename}
diff --git a/${filename} b/${filename}
new file mode 100644
index 000000000..6f88e1c98
--- /dev/null
+++ b/${filename}
@@ -0,0 +1,13245 @@
+2022-05-19 13:55:55,605 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 13:55:55,668 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 13:55:55,822 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 13:55:55,822 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 13:55:55,832 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 13:55:55,924 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 13:55:55,937 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 13:55:55,939 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 13:55:55,939 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 13:55:55,939 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 13:55:55,940 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 13:55:55,940 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 13:55:55,940 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 13:55:55,944 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 13:55:55,945 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 13:55:55,945 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 13:55:55,992 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 13:55:56,006 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,006 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,006 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,007 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,007 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,007 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,008 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 13:55:56,059 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 13:55:56,061 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 13:55:56,083 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 13:55:56,088 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 13:55:56,117 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 13:55:56,120 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 13:55:56,121 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 13:55:56,131 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 13:55:56,132 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 13:55:56,132 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 13:55:56,132 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 13:55:56,137 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 13:55:56,138 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 13:55:56,139 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 13:55:56,139 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 13:55:56,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 13:55:56,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 13:55:56,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 13:55:56,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 13:55:56,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 13:55:56,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 13:55:56,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 13:55:56,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 13:55:56,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 13:55:56,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 13:55:56,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 13:55:56,726 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 13:55:56,727 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 13:55:56,728 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 13:55:56,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 13:55:56,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 13:55:56,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 13:55:56,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 13:55:56,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 13:55:56,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 13:55:56,735 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 13:55:56,735 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 13:55:56,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 13:55:56,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 13:55:56,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 13:55:56,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 13:55:56,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 13:55:56,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 13:55:56,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 13:55:56,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 13:55:56,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 13:55:56,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 13:55:56,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 13:55:56,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 13:55:56,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 13:55:56,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 13:55:56,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 13:55:56,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 13:55:56,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 13:55:56,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 13:55:56,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 13:55:56,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 13:55:56,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 13:55:56,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 13:55:56,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 13:55:56,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 13:55:56,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 13:55:56,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 13:55:56,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 13:55:56,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 13:55:56,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 13:55:56,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 13:55:56,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 13:55:56,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 13:55:56,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 13:55:56,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 13:55:56,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 13:55:56,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 13:55:56,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 13:55:56,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 13:55:56,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 13:55:56,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 13:55:56,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 13:55:56,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 13:55:56,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 13:55:56,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 13:55:56,770 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 13:55:56,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 13:55:56,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 13:55:56,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 13:55:56,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 13:55:56,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 13:55:56,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 13:55:56,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 13:55:56,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 13:55:56,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 13:55:56,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 14:31:01,775 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 14:31:01,846 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 14:31:01,988 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:31:01,989 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:31:01,996 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 14:31:02,099 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 14:31:02,118 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 14:31:02,121 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 14:31:02,122 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 14:31:02,122 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:31:02,123 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:31:02,123 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:31:02,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:31:02,130 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 14:31:02,131 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:31:02,132 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:31:02,211 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 14:31:02,258 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,259 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,260 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,261 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,261 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,262 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,263 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:31:02,324 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 14:31:02,326 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 14:31:02,343 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 14:31:02,347 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 14:31:02,372 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 14:31:02,376 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:31:02,376 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:31:02,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 14:31:02,386 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 14:31:02,387 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 14:31:02,387 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 14:31:02,392 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:31:02,392 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:31:02,394 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:31:02,394 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:31:02,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 14:31:02,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 14:31:02,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 14:31:02,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 14:31:02,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 14:31:02,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 14:31:02,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 14:31:02,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 14:31:02,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 14:31:02,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 14:31:02,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 14:31:02,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 14:31:02,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 14:31:02,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 14:31:02,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 14:31:02,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 14:31:02,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 14:31:02,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 14:31:02,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 14:31:02,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 14:31:02,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 14:31:02,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 14:31:02,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 14:31:02,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 14:31:02,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 14:31:02,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 14:31:02,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 14:31:02,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 14:31:02,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 14:31:02,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 14:31:02,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 14:31:02,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 14:31:02,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 14:31:02,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 14:31:02,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 14:31:02,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 14:31:02,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 14:31:02,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 14:31:02,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 14:31:02,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 14:31:02,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 14:31:02,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 14:31:02,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 14:31:02,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 14:31:02,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 14:31:02,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 14:31:02,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 14:31:02,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 14:31:02,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 14:31:02,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 14:31:02,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 14:31:02,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 14:31:02,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 14:31:02,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 14:31:02,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 14:31:02,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 14:31:02,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 14:31:03,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 14:31:03,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 14:31:03,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 14:31:03,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 14:31:03,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 14:31:03,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 14:31:03,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 14:31:03,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 14:31:03,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 14:31:03,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 14:31:03,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 14:31:03,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 14:31:03,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 14:31:03,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 14:31:03,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 14:31:03,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 14:31:03,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 14:31:03,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 14:31:03,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 14:31:03,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 14:31:03,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 14:31:03,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 14:31:03,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 14:31:03,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 14:31:03,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 14:31:03,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 14:31:03,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 14:31:03,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 14:31:03,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 14:31:03,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 14:31:03,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 14:31:03,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 14:31:03,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 14:31:03,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 14:31:03,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 14:31:03,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 14:31:03,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 14:31:03,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 14:31:03,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 14:31:03,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 14:31:03,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 14:31:03,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 14:31:03,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 14:31:03,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 14:31:03,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 14:31:03,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 14:31:03,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 14:31:03,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 14:31:03,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 14:31:03,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 14:31:03,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 14:31:03,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 14:31:03,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 14:31:03,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 14:31:03,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 14:31:03,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 14:31:03,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 14:31:03,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 14:31:03,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 14:31:03,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 14:31:03,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 14:31:03,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 14:31:03,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 14:31:03,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 14:31:03,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 14:31:03,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 14:31:03,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 14:31:03,051 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 14:31:03,052 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 14:31:03,053 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 14:31:03,054 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 14:31:03,055 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 14:31:03,056 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 14:31:03,057 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 14:31:03,057 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 14:35:55,853 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 14:35:55,899 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 14:35:56,003 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:35:56,004 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:35:56,009 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 14:35:56,088 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 14:35:56,102 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 14:35:56,105 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 14:35:56,105 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 14:35:56,105 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:35:56,106 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:35:56,106 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:35:56,107 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:35:56,111 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 14:35:56,112 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:35:56,112 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:35:56,157 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 14:35:56,171 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,172 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,172 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,172 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,173 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,173 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,173 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:35:56,227 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 14:35:56,229 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 14:35:56,249 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 14:35:56,254 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 14:35:56,283 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 14:35:56,286 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:35:56,286 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:35:56,296 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 14:35:56,297 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 14:35:56,297 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 14:35:56,298 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 14:35:56,303 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:35:56,303 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:35:56,304 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:35:56,305 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:35:56,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 14:35:56,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 14:35:56,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 14:35:56,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 14:35:56,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 14:35:56,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 14:35:56,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 14:35:56,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 14:35:56,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 14:35:56,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 14:35:56,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 14:35:56,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 14:35:56,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 14:35:56,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 14:35:56,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 14:35:56,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 14:35:56,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 14:35:56,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 14:35:56,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 14:35:56,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 14:35:56,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 14:35:56,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 14:35:56,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 14:35:56,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 14:35:56,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 14:35:56,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 14:35:56,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 14:35:56,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 14:35:56,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 14:35:56,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 14:35:56,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 14:35:56,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 14:35:56,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 14:35:56,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 14:35:56,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 14:35:56,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 14:35:56,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 14:35:56,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 14:35:56,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 14:35:56,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 14:35:56,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 14:35:56,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 14:35:56,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 14:35:56,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 14:35:56,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 14:35:56,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 14:35:56,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 14:35:56,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 14:35:56,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 14:35:56,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 14:35:56,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 14:35:56,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 14:35:56,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 14:35:56,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 14:35:56,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 14:35:56,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 14:35:56,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 14:35:56,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 14:35:56,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 14:35:56,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 14:35:56,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 14:35:56,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 14:35:56,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 14:35:56,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 14:35:56,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 14:35:56,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 14:35:56,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 14:35:56,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 14:35:56,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 14:35:56,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 14:35:56,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 14:35:56,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 14:35:56,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 14:35:56,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 14:35:56,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 14:35:56,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 14:35:56,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 14:35:56,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 14:35:56,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 14:35:56,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 14:35:56,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 14:35:56,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 14:35:56,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 14:35:56,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 14:35:56,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 14:35:56,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 14:35:56,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 14:35:56,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 14:35:56,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 14:35:56,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 14:35:56,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 14:35:56,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 14:35:56,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 14:35:56,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 14:35:56,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 14:35:56,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 14:35:56,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 14:35:56,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 14:35:56,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 14:35:56,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 14:35:56,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 14:35:56,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 14:35:56,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 14:35:56,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 14:35:56,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 14:35:56,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 14:35:56,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 14:35:56,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 14:35:56,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 14:35:56,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 14:35:56,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 14:35:56,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 14:35:56,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 14:35:56,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 14:35:56,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 14:35:56,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 14:35:56,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 14:35:56,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 14:35:56,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 14:35:56,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 14:35:56,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 14:35:56,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 14:35:56,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 14:35:56,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 14:35:56,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 14:35:56,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 14:35:56,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 14:35:56,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 14:35:56,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 14:35:56,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 14:35:56,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 14:35:56,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 14:35:56,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 14:35:56,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 14:35:56,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 14:35:56,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 14:35:56,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 14:35:56,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 14:35:56,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 14:35:56,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 14:35:56,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 14:35:56,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 14:35:56,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 14:35:56,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 14:35:56,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 14:35:56,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 14:35:56,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 14:35:56,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 14:35:56,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 14:35:56,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 14:35:56,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 14:35:56,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 14:35:56,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 14:35:56,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 14:35:56,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 14:35:56,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 14:35:56,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 14:35:56,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 14:35:56,906 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 14:35:56,907 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 14:35:56,908 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 14:35:56,909 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 14:35:56,910 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 14:35:56,911 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 14:35:56,912 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 14:35:56,913 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 14:35:56,914 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 14:35:56,915 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 14:35:56,916 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 14:35:56,917 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 14:35:56,918 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 14:35:56,919 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 14:35:56,920 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 14:36:34,041 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 14:36:34,085 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 14:36:34,183 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:36:34,184 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:36:34,189 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 14:36:34,260 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 14:36:34,275 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 14:36:34,277 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 14:36:34,278 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 14:36:34,278 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:36:34,279 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:36:34,279 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:36:34,280 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:36:34,284 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 14:36:34,285 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:36:34,285 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:36:34,329 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 14:36:34,357 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,358 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,358 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,359 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,359 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,359 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,360 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:36:34,391 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 14:36:34,393 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 14:36:34,411 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 14:36:34,417 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 14:36:34,446 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 14:36:34,450 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:36:34,450 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:36:34,460 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 14:36:34,460 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 14:36:34,461 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 14:36:34,461 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 14:36:34,466 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:36:34,466 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:36:34,468 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:36:34,468 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:36:34,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 14:36:34,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 14:36:34,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 14:36:34,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 14:36:34,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 14:36:34,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 14:36:34,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 14:36:34,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 14:36:34,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 14:36:34,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 14:36:34,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 14:36:34,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 14:36:34,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 14:36:34,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 14:36:34,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 14:36:34,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 14:36:34,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 14:36:34,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 14:36:34,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 14:36:34,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 14:36:34,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 14:36:34,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 14:36:34,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 14:36:34,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 14:36:34,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 14:36:34,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 14:36:34,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 14:36:34,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 14:36:34,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 14:36:34,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 14:36:34,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 14:36:34,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 14:36:34,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 14:36:34,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 14:36:34,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 14:36:34,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 14:36:34,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 14:36:34,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 14:36:34,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 14:36:34,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 14:36:34,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 14:36:35,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 14:36:35,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 14:36:35,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 14:36:35,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 14:36:35,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 14:36:35,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 14:36:35,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 14:36:35,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 14:36:35,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 14:36:35,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 14:36:35,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 14:36:35,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 14:36:35,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 14:36:35,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 14:36:35,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 14:36:35,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 14:36:35,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 14:36:35,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 14:36:35,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 14:36:35,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 14:36:35,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 14:36:35,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 14:36:35,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 14:36:35,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 14:36:35,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 14:36:35,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 14:36:35,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 14:36:35,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 14:36:35,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 14:36:35,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 14:36:35,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 14:36:35,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 14:36:35,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 14:36:35,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 14:36:35,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 14:36:35,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 14:36:35,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 14:36:35,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 14:36:35,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 14:36:35,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 14:36:35,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 14:36:35,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 14:36:35,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 14:36:35,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 14:36:35,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 14:36:35,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 14:36:35,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 14:36:35,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 14:36:35,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 14:36:35,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 14:36:35,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 14:36:35,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 14:36:35,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 14:36:35,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 14:36:35,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 14:36:35,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 14:36:35,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 14:36:35,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 14:36:35,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 14:36:35,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 14:36:35,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 14:36:35,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 14:36:35,047 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 14:36:35,048 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 14:36:35,049 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 14:36:35,050 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 14:37:59,748 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 14:37:59,809 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 14:37:59,933 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:37:59,933 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 14:37:59,939 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 14:38:00,023 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 14:38:00,038 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 14:38:00,040 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 14:38:00,040 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 14:38:00,041 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:38:00,041 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 14:38:00,041 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:38:00,042 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 14:38:00,047 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 14:38:00,047 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:38:00,047 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 14:38:00,097 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 14:38:00,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,125 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,125 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,125 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,125 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 14:38:00,151 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 14:38:00,153 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 14:38:00,168 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 14:38:00,172 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 14:38:00,193 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 14:38:00,195 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:38:00,196 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 14:38:00,203 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 14:38:00,204 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 14:38:00,204 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 14:38:00,205 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 14:38:00,208 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:38:00,209 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 14:38:00,210 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:38:00,210 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 14:38:00,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 14:38:00,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 14:38:00,729 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 14:38:00,730 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 14:38:00,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 14:38:00,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 14:38:00,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 14:38:00,731 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 14:38:00,732 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 14:38:00,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 14:38:00,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 14:38:00,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 14:38:00,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 14:38:00,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 14:38:00,733 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 14:38:00,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 14:38:00,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 14:38:00,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 14:38:00,734 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 14:38:00,735 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 14:38:00,735 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 14:38:00,735 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 14:38:00,736 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 14:38:00,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 14:38:00,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 14:38:00,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 14:38:00,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 14:38:00,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 14:38:00,737 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 14:38:00,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 14:38:00,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 14:38:00,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 14:38:00,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 14:38:00,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 14:38:00,738 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 14:38:00,739 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 14:38:00,740 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 14:38:00,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 14:38:00,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 14:38:00,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 14:38:00,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 14:38:00,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 14:38:00,741 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 14:38:00,742 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 14:38:00,743 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 14:38:00,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 14:38:00,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 14:38:00,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 14:38:00,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 14:38:00,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 14:38:00,744 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 14:38:00,745 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 14:38:00,746 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 14:38:00,747 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 14:38:00,748 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 14:38:00,749 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 14:38:00,750 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 14:38:00,751 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 14:38:00,752 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 14:38:00,753 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 14:38:00,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 14:38:00,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 14:38:00,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 14:38:00,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 14:38:00,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 14:38:00,754 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 14:38:00,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 14:38:00,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 14:38:00,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 14:38:00,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 14:38:00,755 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 14:38:00,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 14:38:00,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 14:38:00,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 14:38:00,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 14:38:00,756 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 14:38:00,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 14:38:00,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 14:38:00,757 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 14:38:00,758 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 14:38:00,759 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 14:38:00,760 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 14:38:00,761 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 14:38:00,762 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 14:38:00,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 14:38:00,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 14:38:00,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 14:38:00,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 14:38:00,763 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 14:38:00,764 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 14:38:00,765 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 14:38:00,766 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 14:38:00,767 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 14:38:00,768 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 14:38:00,769 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 14:38:00,771 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 14:38:00,772 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 14:38:00,773 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 14:38:00,774 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 14:38:00,775 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 14:38:00,776 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 14:38:00,777 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 14:38:00,778 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 14:38:00,779 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 14:38:00,780 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 14:38:00,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 14:38:00,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 14:38:00,783 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 14:38:00,783 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 14:38:00,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 14:38:00,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 14:38:00,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 14:38:00,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 14:38:00,787 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 14:38:00,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 14:38:00,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 14:38:00,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 14:38:00,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 14:38:00,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 14:38:00,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 14:38:00,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 14:38:00,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 14:38:00,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 14:38:00,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 14:38:00,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 14:38:00,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 14:38:00,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 14:38:00,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 14:38:00,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 14:38:00,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 14:38:00,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 14:38:00,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 14:38:00,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 14:38:00,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 14:38:00,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 14:38:00,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 14:38:00,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 14:38:00,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 14:38:00,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 14:38:00,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 14:38:00,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 14:38:00,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 14:38:00,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 14:38:00,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 14:38:00,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 14:38:00,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 14:38:00,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 14:38:00,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:29:20,053 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:29:20,101 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:29:20,202 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:29:20,203 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:29:20,207 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:29:20,282 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:29:20,297 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:29:20,299 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:29:20,299 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:29:20,300 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:29:20,300 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:29:20,300 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:29:20,301 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:29:20,305 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:29:20,305 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:29:20,306 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:29:20,347 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:29:20,360 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,360 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,360 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,375 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,375 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,376 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,376 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:29:20,407 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:29:20,409 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:29:20,427 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:29:20,431 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:29:20,456 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:29:20,459 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:29:20,459 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:29:20,468 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:29:20,469 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:29:20,469 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:29:20,469 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:29:20,474 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:29:20,474 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:29:20,475 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:29:20,476 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:29:20,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:29:20,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:29:20,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:29:20,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:29:20,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:29:20,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:29:20,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:29:20,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:29:20,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:29:20,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:29:20,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:29:20,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:29:20,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:29:20,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:29:20,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:29:20,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:29:20,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:29:20,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:29:20,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:29:20,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:29:20,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:29:20,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:29:20,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:29:20,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:29:20,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:29:20,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:29:20,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:29:20,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:29:20,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:29:20,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:29:20,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:29:20,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:29:20,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:29:20,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:29:20,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:29:20,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:29:20,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:29:20,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:29:20,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:29:20,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:29:20,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:29:20,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:29:20,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:29:20,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:29:20,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:29:20,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:29:20,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:29:21,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:29:21,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:29:21,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:29:21,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:29:21,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:29:21,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:29:21,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:29:21,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:29:21,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:29:21,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:29:21,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:29:21,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:29:21,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:29:21,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:29:21,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:29:21,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:29:21,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:29:21,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:29:21,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:29:21,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:29:21,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:29:21,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:29:21,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:29:21,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:29:21,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:29:21,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:29:21,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:36:36,767 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:36:36,818 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:36:36,922 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:36:36,923 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:36:36,928 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:36:37,006 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:36:37,020 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:36:37,022 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:36:37,023 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:36:37,023 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:36:37,023 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:36:37,024 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:36:37,024 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:36:37,028 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:36:37,029 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:36:37,029 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:36:37,071 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:36:37,103 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,104 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,104 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,104 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,104 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,105 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,105 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:36:37,137 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:36:37,139 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:36:37,160 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:36:37,165 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:36:37,191 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:36:37,194 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:36:37,194 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:36:37,204 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:36:37,204 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:36:37,205 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:36:37,205 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:36:37,211 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:36:37,212 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:36:37,213 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:36:37,213 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:36:37,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:36:37,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:36:37,781 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:36:37,782 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:36:37,783 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:36:37,783 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:36:37,783 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:36:37,784 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:36:37,784 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:36:37,784 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:36:37,784 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:36:37,784 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:36:37,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:36:37,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:36:37,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:36:37,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:36:37,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:36:37,785 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:36:37,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:36:37,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:36:37,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:36:37,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:36:37,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:36:37,786 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:36:37,787 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:36:37,787 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:36:37,787 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:36:37,787 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:36:37,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:36:37,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:36:37,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:36:37,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:36:37,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:36:37,788 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:36:37,789 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:36:37,790 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:36:37,791 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:36:37,792 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:36:37,793 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:36:37,794 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:36:37,795 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:36:37,796 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:36:37,797 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:36:37,798 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:36:37,799 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:36:37,800 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:36:37,801 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:36:37,802 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:36:37,803 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:36:37,804 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:36:37,805 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:36:37,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:36:37,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:36:37,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:36:37,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:36:37,806 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:36:37,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:36:37,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:36:37,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:36:37,807 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:36:37,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:36:37,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:36:37,808 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:36:37,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:36:37,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:36:37,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:36:37,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:36:37,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:36:37,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:36:37,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:36:37,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:36:37,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:36:37,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:36:37,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:36:37,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:36:37,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:36:37,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:36:37,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:36:37,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:36:37,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:36:37,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:36:37,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:36:37,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:36:37,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:36:37,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:36:37,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:36:37,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:36:37,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:36:37,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:36:37,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:36:37,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:36:37,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:36:37,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:36:37,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:36:37,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:36:37,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:36:37,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:36:37,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:36:37,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:36:37,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:36:37,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:36:37,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:36:37,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:36:37,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:36:37,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:36:37,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:36:37,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:36:37,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:36:37,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:36:37,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:36:37,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:36:37,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:36:37,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:36:37,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:36:37,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:36:37,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:36:37,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:36:37,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:36:37,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:36:37,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:36:37,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:36:37,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:36:37,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:36:37,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:36:37,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:36:37,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:36:37,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:36:37,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:36:37,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:36:37,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:36:37,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:36:37,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:38:19,846 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:38:19,894 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:38:19,999 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:38:20,000 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:38:20,005 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:38:20,083 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:38:20,096 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:38:20,098 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:38:20,099 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:38:20,099 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:38:20,100 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:38:20,100 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:38:20,100 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:38:20,106 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:38:20,106 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:38:20,107 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:38:20,151 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:38:20,180 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,180 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,181 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,181 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,182 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,182 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,182 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:38:20,214 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:38:20,216 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:38:20,235 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:38:20,240 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:38:20,267 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:38:20,271 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:38:20,271 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:38:20,281 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:38:20,281 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:38:20,282 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:38:20,282 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:38:20,287 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:38:20,287 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:38:20,289 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:38:20,289 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:38:20,809 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:38:20,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:38:20,810 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:38:20,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:38:20,811 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:38:20,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:38:20,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:38:20,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:38:20,812 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:38:20,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:38:20,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:38:20,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:38:20,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:38:20,813 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:38:20,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:38:20,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:38:20,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:38:20,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:38:20,814 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:38:20,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:38:20,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:38:20,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:38:20,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:38:20,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:38:20,815 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:38:20,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:38:20,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:38:20,816 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:38:20,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:38:20,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:38:20,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:38:20,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:38:20,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:38:20,817 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:38:20,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:38:20,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:38:20,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:38:20,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:38:20,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:38:20,818 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:38:20,819 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:38:20,820 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:38:20,821 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:38:20,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:38:20,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:38:20,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:38:20,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:38:20,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:38:20,822 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:38:20,823 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:38:20,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:38:20,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:38:20,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:38:20,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:38:20,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:38:20,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:38:20,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:38:20,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:38:20,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:38:20,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:38:20,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:38:20,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:38:20,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:38:20,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:38:20,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:38:20,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:38:20,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:38:20,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:38:20,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:38:20,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:38:20,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:38:20,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:38:20,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:38:20,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:38:20,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:38:20,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:38:20,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:38:20,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:38:20,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:38:20,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:38:20,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:38:20,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:38:20,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:38:20,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:38:20,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:38:20,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:38:20,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:38:20,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:38:20,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:38:20,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:38:20,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:38:20,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:38:20,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:38:20,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:38:20,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:38:20,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:38:20,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:38:20,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:38:20,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:38:20,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:38:20,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:38:20,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:38:20,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:38:20,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:38:20,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:38:20,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:38:20,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:38:20,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:38:20,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:38:20,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:38:20,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:38:20,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:38:20,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:38:20,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:38:20,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:38:20,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:38:20,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:38:20,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:38:20,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:38:20,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:38:20,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:38:20,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:38:20,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:38:20,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:38:20,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:38:20,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:38:20,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:38:20,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:38:20,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:38:20,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:38:20,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:38:20,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:38:20,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:38:20,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:38:20,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:38:20,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:38:20,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:38:20,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:38:20,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:38:20,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:38:20,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:38:20,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:38:20,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:38:20,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:38:20,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:38:20,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:38:20,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:38:20,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:38:20,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:38:20,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:38:20,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:38:20,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:38:20,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:38:20,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:38:20,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:38:20,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:38:20,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:38:20,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:38:20,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:38:20,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:38:20,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:38:20,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:38:20,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:38:20,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:38:20,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:38:20,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:38:20,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:38:20,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:38:20,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:38:20,889 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:38:20,890 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:38:20,891 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:38:20,892 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:38:20,893 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:38:20,894 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:38:20,895 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:38:20,896 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:38:20,897 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:38:20,898 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:38:20,899 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:38:20,900 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:38:20,901 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:38:20,902 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:38:20,903 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:38:20,904 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:38:20,905 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:39:58,632 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:39:58,683 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:39:58,792 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:39:58,793 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:39:58,798 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:39:58,881 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:39:58,895 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:39:58,897 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:39:58,898 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:39:58,898 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:39:58,898 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:39:58,899 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:39:58,899 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:39:58,904 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:39:58,904 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:39:58,904 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:39:58,949 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:39:58,983 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:58,983 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:58,984 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:58,984 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:58,985 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:58,985 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:58,985 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:39:59,019 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:39:59,021 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:39:59,040 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:39:59,046 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:39:59,072 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:39:59,075 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:39:59,076 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:39:59,087 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:39:59,087 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:39:59,088 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:39:59,088 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:39:59,095 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:39:59,095 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:39:59,096 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:39:59,097 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:39:59,636 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:39:59,636 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:39:59,637 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:39:59,638 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:39:59,638 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:39:59,639 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:39:59,639 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:39:59,639 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:39:59,640 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:39:59,640 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:39:59,641 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:39:59,641 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:39:59,641 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:39:59,642 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:39:59,642 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:39:59,643 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:39:59,643 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:39:59,643 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:39:59,643 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:39:59,643 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:39:59,644 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:39:59,644 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:39:59,644 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:39:59,644 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:39:59,644 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:39:59,645 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:39:59,645 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:39:59,645 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:39:59,646 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:39:59,646 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:39:59,646 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:39:59,647 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:39:59,648 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:39:59,648 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:39:59,648 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:39:59,648 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:39:59,648 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:39:59,649 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:39:59,649 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:39:59,649 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:39:59,649 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:39:59,649 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:39:59,649 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:39:59,650 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:39:59,650 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:39:59,650 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:39:59,650 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:39:59,650 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:39:59,650 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:39:59,651 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:39:59,651 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:39:59,651 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:39:59,651 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:39:59,651 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:39:59,651 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:39:59,652 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:39:59,653 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:39:59,653 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:39:59,653 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:39:59,653 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:39:59,653 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:39:59,654 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:39:59,654 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:39:59,654 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:39:59,654 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:39:59,654 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:39:59,654 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:39:59,655 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:39:59,656 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:39:59,657 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:39:59,658 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:39:59,659 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:39:59,660 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:39:59,661 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:39:59,661 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:39:59,661 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:39:59,661 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:39:59,661 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:39:59,661 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:39:59,662 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:39:59,662 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:39:59,662 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:39:59,662 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:39:59,662 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:39:59,662 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:39:59,663 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:39:59,664 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:39:59,664 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:39:59,664 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:39:59,664 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:39:59,664 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:39:59,664 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:39:59,665 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:39:59,665 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:39:59,665 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:39:59,665 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:39:59,666 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:39:59,666 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:39:59,666 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:39:59,666 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:39:59,666 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:39:59,666 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:39:59,667 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:39:59,668 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:39:59,669 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:39:59,669 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:39:59,669 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:39:59,669 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:39:59,669 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:39:59,669 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:39:59,670 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:39:59,670 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:39:59,670 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:39:59,670 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:39:59,670 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:39:59,671 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:39:59,672 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:39:59,673 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:39:59,674 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:39:59,674 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:39:59,674 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:39:59,674 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:39:59,674 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:39:59,674 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:39:59,675 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:39:59,676 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:39:59,677 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:39:59,678 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:39:59,679 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:39:59,680 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:39:59,681 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:39:59,682 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:39:59,683 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:39:59,684 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:39:59,684 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:39:59,684 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:39:59,684 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:39:59,684 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:39:59,686 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:39:59,687 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:39:59,688 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:39:59,689 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:39:59,690 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:39:59,691 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:39:59,692 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:39:59,693 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:39:59,694 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:39:59,695 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:39:59,695 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:39:59,695 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:39:59,695 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:39:59,695 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:39:59,696 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:39:59,697 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:39:59,698 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:39:59,699 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:39:59,701 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:39:59,702 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:39:59,702 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:39:59,703 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:39:59,704 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:39:59,704 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:39:59,705 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:39:59,706 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:39:59,706 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:39:59,706 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:39:59,706 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:39:59,706 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:39:59,706 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:39:59,707 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:39:59,708 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:39:59,709 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:39:59,710 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:39:59,711 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:39:59,712 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:39:59,713 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:39:59,714 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:39:59,715 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:39:59,716 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:39:59,717 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:39:59,718 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:39:59,719 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:39:59,720 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:39:59,721 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:39:59,722 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:39:59,723 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:39:59,724 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:39:59,725 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:44:41,382 ERROR o.s.j.Model [main] An element of type geneProduct with the id "G_WBGene00007073" is already present in this model "WormJam". The new element of type geneProduct will not have it's id set. In some cases, the new element will not be added to the model.
+2022-05-19 16:44:41,383 ERROR o.s.j.IdentifierException [main] An element with the id "G_WBGene00007073" is already present in the SBML model. The element geneProduct will ignore the value.
+2022-05-19 16:44:42,005 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:44:42,078 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:44:42,194 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:44:42,194 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:44:42,200 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:44:42,274 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:44:42,287 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:44:42,289 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:44:42,289 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:44:42,290 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:44:42,290 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:44:42,291 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:44:42,291 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:44:42,296 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:44:42,296 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:44:42,296 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:44:42,342 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:44:42,372 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,373 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,374 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,374 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,375 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,375 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,375 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:44:42,407 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:44:42,409 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:44:42,427 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:44:42,432 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:44:42,458 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:44:42,461 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:44:42,462 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:44:42,471 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:44:42,472 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:44:42,472 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:44:42,473 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:44:42,477 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:44:42,478 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:44:42,479 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:44:42,479 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:44:42,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:44:42,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:44:42,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:44:42,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:44:42,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:44:42,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:44:42,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:44:42,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:44:42,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:44:42,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:44:42,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:44:42,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:44:42,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:44:42,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:44:42,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:44:42,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:44:42,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:44:42,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:44:42,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:44:42,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:44:42,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:44:42,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:44:42,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:44:42,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:44:42,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:44:42,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:44:42,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:44:42,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:44:42,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:44:42,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:44:42,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:44:42,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:44:42,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:44:42,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:44:42,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:44:42,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:44:42,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:44:42,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:44:42,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:44:42,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:44:42,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:44:42,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:44:42,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:44:42,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:44:42,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:44:42,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:44:42,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:44:42,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:44:42,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:44:42,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:44:42,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:44:42,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:44:42,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:44:42,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:44:43,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:44:43,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:44:43,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:44:43,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:44:43,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:44:43,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:44:43,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:44:43,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:44:43,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:44:43,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:44:43,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:44:43,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:44:43,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:44:43,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:44:43,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:44:43,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:44:43,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:44:43,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:44:43,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:44:43,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:44:43,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:44:43,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:44:43,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:44:43,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:44:43,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:44:43,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:44:43,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:44:43,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:44:43,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:44:43,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:44:43,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:44:43,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:44:43,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:44:43,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:44:43,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:44:43,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:44:43,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:44:43,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:44:43,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:44:43,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:44:43,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:44:43,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:44:43,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:44:43,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:44:43,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:44:43,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:46:05,237 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:46:05,284 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:46:05,386 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:46:05,387 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:46:05,392 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:46:05,465 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:46:05,480 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:46:05,482 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:46:05,483 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:46:05,483 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:46:05,484 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:46:05,484 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:46:05,484 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:46:05,489 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:46:05,490 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:46:05,490 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:46:05,535 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:46:05,548 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,549 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,549 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,550 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,550 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,550 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,551 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:46:05,604 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:46:05,606 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:46:05,627 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:46:05,632 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:46:05,659 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:46:05,662 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:46:05,663 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:46:05,672 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:46:05,673 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:46:05,674 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:46:05,674 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:46:05,679 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:46:05,680 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:46:05,681 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:46:05,681 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:46:06,166 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:46:06,166 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:46:06,166 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:46:06,167 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:46:06,167 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:46:06,167 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:46:06,167 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:46:06,168 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:46:06,169 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:46:06,170 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:46:06,171 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:46:06,172 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:46:06,173 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:46:06,174 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:46:06,175 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:46:06,176 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:46:06,177 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:46:06,178 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:46:06,179 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:46:06,180 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:46:06,181 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:46:06,182 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:46:06,182 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:46:06,182 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:46:06,182 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:46:06,182 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:46:06,182 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:46:06,183 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:46:06,184 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:46:06,185 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:46:06,186 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:46:06,187 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:46:06,188 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:46:06,189 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:46:06,190 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:46:06,190 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:46:06,190 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:46:06,190 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:46:06,190 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:46:06,191 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:46:06,192 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:46:06,193 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:46:06,194 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:46:06,195 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:46:06,196 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:46:06,197 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:46:06,198 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:46:06,200 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:46:06,200 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:46:06,200 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:46:06,200 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:46:06,201 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:46:06,201 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:46:06,202 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:46:06,203 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:46:06,204 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:46:06,205 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:46:06,206 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:46:06,207 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:46:06,208 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:46:06,209 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:46:06,210 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:46:06,211 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:46:06,212 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:46:06,213 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:46:06,214 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:46:06,215 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-19 16:51:56,409 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-19 16:51:56,459 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-19 16:51:56,569 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:51:56,569 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-19 16:51:56,575 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-19 16:51:56,658 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-19 16:51:56,673 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-19 16:51:56,676 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-19 16:51:56,676 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-19 16:51:56,676 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:51:56,677 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-19 16:51:56,677 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:51:56,678 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-19 16:51:56,684 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-19 16:51:56,685 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:51:56,685 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-19 16:51:56,736 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-19 16:51:56,750 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,750 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,751 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,751 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,752 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,752 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,752 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-19 16:51:56,811 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-19 16:51:56,813 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-19 16:51:56,832 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-19 16:51:56,837 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-19 16:51:56,865 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-19 16:51:56,869 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:51:56,870 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-19 16:51:56,881 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-19 16:51:56,882 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-19 16:51:56,883 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-19 16:51:56,883 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-19 16:51:56,889 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:51:56,889 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-19 16:51:56,890 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:51:56,891 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-19 16:51:57,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-19 16:51:57,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-19 16:51:57,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-19 16:51:57,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-19 16:51:57,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-19 16:51:57,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-19 16:51:57,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-19 16:51:57,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-19 16:51:57,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-19 16:51:57,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-19 16:51:57,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-19 16:51:57,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-19 16:51:57,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-19 16:51:57,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-19 16:51:57,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-19 16:51:57,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-19 16:51:57,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-19 16:51:57,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-19 16:51:57,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-19 16:51:57,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-19 16:51:57,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-19 16:51:57,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-19 16:51:57,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-19 16:51:57,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-19 16:51:57,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-19 16:51:57,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-19 16:51:57,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-19 16:51:57,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-19 16:51:57,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-19 16:51:57,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-19 16:51:57,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-19 16:51:57,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-19 16:51:57,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-19 16:51:57,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-19 16:51:57,510 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-19 16:51:57,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-19 16:51:57,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-19 16:51:57,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-19 16:51:57,514 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-19 16:51:57,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-19 16:51:57,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-19 16:51:57,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-19 16:51:57,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-19 16:51:57,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-19 16:51:57,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-19 16:51:57,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-19 16:51:57,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-19 16:51:57,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-19 16:51:57,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-19 16:51:57,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-19 16:51:57,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-19 16:51:57,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-19 16:51:57,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-19 16:51:57,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-19 16:51:57,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-19 16:51:57,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-19 16:51:57,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-19 16:51:57,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-19 16:51:57,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-19 16:51:57,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-19 16:51:57,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-19 16:51:57,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-19 16:51:57,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-19 16:51:57,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-19 16:51:57,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-19 16:51:57,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-19 16:51:57,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-19 16:51:57,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-19 16:51:57,540 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-19 16:51:57,541 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-19 16:51:57,542 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-19 16:51:57,543 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-19 16:51:57,544 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-19 16:51:57,545 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-19 16:51:57,546 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-19 16:51:57,547 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-19 16:51:57,548 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-19 16:51:57,549 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-19 16:51:57,550 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-19 16:51:57,551 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-19 16:51:57,552 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-19 16:51:57,553 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-19 16:51:57,554 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-19 16:51:57,555 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-19 16:51:57,556 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-19 16:51:57,557 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-19 16:51:57,558 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-19 16:51:57,559 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-19 16:51:57,560 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-19 16:51:57,561 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-19 16:51:57,562 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-19 16:51:57,563 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-19 16:51:57,564 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-20 09:17:23,833 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-20 09:17:23,908 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-20 09:17:24,033 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 09:17:24,034 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 09:17:24,041 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-20 09:17:24,139 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-20 09:17:24,155 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-20 09:17:24,157 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-20 09:17:24,158 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-20 09:17:24,158 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 09:17:24,158 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 09:17:24,159 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 09:17:24,159 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 09:17:24,166 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-20 09:17:24,167 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 09:17:24,168 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 09:17:24,222 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-20 09:17:24,238 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,239 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,239 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,240 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,240 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,240 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,241 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:24,312 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-20 09:17:24,315 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-20 09:17:24,340 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-20 09:17:24,347 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-20 09:17:24,371 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-20 09:17:24,374 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 09:17:24,375 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 09:17:24,384 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-20 09:17:24,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-20 09:17:24,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-20 09:17:24,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-20 09:17:24,390 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 09:17:24,390 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 09:17:24,392 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 09:17:24,392 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 09:17:24,949 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-20 09:17:24,949 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-20 09:17:24,949 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-20 09:17:24,950 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-20 09:17:24,950 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-20 09:17:24,950 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-20 09:17:24,950 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-20 09:17:24,950 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-20 09:17:24,950 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-20 09:17:24,951 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-20 09:17:24,952 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-20 09:17:24,953 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-20 09:17:24,953 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-20 09:17:24,953 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-20 09:17:24,953 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-20 09:17:24,954 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-20 09:17:24,955 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-20 09:17:24,956 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-20 09:17:24,957 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-20 09:17:24,958 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-20 09:17:24,959 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-20 09:17:24,960 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-20 09:17:24,961 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-20 09:17:24,962 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-20 09:17:24,963 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-20 09:17:24,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-20 09:17:24,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-20 09:17:24,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-20 09:17:24,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-20 09:17:24,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-20 09:17:24,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-20 09:17:24,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-20 09:17:24,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-20 09:17:24,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-20 09:17:24,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-20 09:17:24,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-20 09:17:24,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-20 09:17:24,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-20 09:17:24,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-20 09:17:24,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-20 09:17:24,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-20 09:17:24,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-20 09:17:24,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-20 09:17:24,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-20 09:17:24,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-20 09:17:24,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-20 09:17:24,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-20 09:17:24,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-20 09:17:24,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-20 09:17:24,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-20 09:17:24,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-20 09:17:24,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-20 09:17:24,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-20 09:17:24,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-20 09:17:24,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-20 09:17:24,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-20 09:17:24,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-20 09:17:24,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-20 09:17:24,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-20 09:17:24,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-20 09:17:24,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-20 09:17:24,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-20 09:17:24,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-20 09:17:24,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-20 09:17:24,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-20 09:17:24,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-20 09:17:24,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-20 09:17:24,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-20 09:17:24,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-20 09:17:24,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-20 09:17:24,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-20 09:17:24,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-20 09:17:24,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-20 09:17:24,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-20 09:17:24,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-20 09:17:24,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-20 09:17:24,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-20 09:17:24,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-20 09:17:24,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-20 09:17:24,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-20 09:17:24,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-20 09:17:24,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-20 09:17:24,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-20 09:17:24,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-20 09:17:25,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-20 09:17:25,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-20 09:17:25,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-20 09:17:25,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-20 09:17:25,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-20 09:17:25,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-20 09:17:25,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-20 09:17:25,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-20 09:17:25,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-20 09:17:25,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-20 09:17:25,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-20 09:17:25,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-20 09:17:25,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-20 09:17:25,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-20 09:17:25,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-20 09:17:25,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-20 09:17:25,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-20 09:17:25,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-20 09:17:25,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-20 09:17:25,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-20 09:17:25,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-20 09:17:25,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-20 09:17:25,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-20 09:17:25,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-20 09:17:25,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-20 09:17:25,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-20 09:17:25,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-20 09:17:25,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-20 09:17:25,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-20 09:17:25,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-20 09:17:25,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-20 09:17:25,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-20 09:17:25,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-20 09:17:25,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-20 09:17:25,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-20 09:17:25,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-20 09:17:25,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-20 09:17:25,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-20 09:17:25,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-20 09:17:25,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-20 09:17:25,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-20 09:17:52,810 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-20 09:17:52,882 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-20 09:17:53,020 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 09:17:53,021 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 09:17:53,029 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-20 09:17:53,109 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-20 09:17:53,121 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-20 09:17:53,123 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-20 09:17:53,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-20 09:17:53,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 09:17:53,124 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 09:17:53,125 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 09:17:53,125 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 09:17:53,129 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-20 09:17:53,129 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 09:17:53,130 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 09:17:53,172 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-20 09:17:53,184 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,184 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,185 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,185 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,185 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,186 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,186 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:17:53,238 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-20 09:17:53,241 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-20 09:17:53,261 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-20 09:17:53,267 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-20 09:17:53,294 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-20 09:17:53,296 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 09:17:53,297 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 09:17:53,304 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-20 09:17:53,305 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-20 09:17:53,305 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-20 09:17:53,306 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-20 09:17:53,310 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 09:17:53,310 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 09:17:53,311 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 09:17:53,312 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 09:17:53,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-20 09:17:53,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-20 09:17:53,824 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-20 09:17:53,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-20 09:17:53,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-20 09:17:53,825 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-20 09:17:53,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-20 09:17:53,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-20 09:17:53,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-20 09:17:53,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-20 09:17:53,826 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-20 09:17:53,827 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-20 09:17:53,828 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-20 09:17:53,829 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-20 09:17:53,830 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-20 09:17:53,831 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-20 09:17:53,832 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-20 09:17:53,833 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-20 09:17:53,834 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-20 09:17:53,835 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-20 09:17:53,836 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-20 09:17:53,837 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-20 09:17:53,838 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-20 09:17:53,839 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-20 09:17:53,840 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-20 09:17:53,841 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-20 09:17:53,842 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-20 09:17:53,843 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-20 09:17:53,844 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-20 09:17:53,845 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-20 09:17:53,846 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-20 09:17:53,847 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-20 09:17:53,848 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-20 09:17:53,849 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-20 09:17:53,850 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-20 09:17:53,851 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-20 09:17:53,852 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-20 09:17:53,853 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-20 09:17:53,854 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-20 09:17:53,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-20 09:17:53,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-20 09:17:53,855 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-20 09:17:53,856 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-20 09:17:53,857 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-20 09:17:53,858 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-20 09:17:53,859 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-20 09:17:53,860 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-20 09:17:53,861 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-20 09:17:53,862 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-20 09:17:53,863 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-20 09:17:53,864 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-20 09:17:53,865 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-20 09:17:53,866 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-20 09:17:53,867 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-20 09:17:53,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-20 09:17:53,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-20 09:17:53,868 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-20 09:17:53,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-20 09:17:53,869 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-20 09:17:53,870 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-20 09:17:53,871 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-20 09:17:53,872 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-20 09:17:53,873 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-20 09:17:53,874 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-20 09:17:53,875 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-20 09:17:53,876 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-20 09:17:53,877 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-20 09:17:53,878 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-20 09:17:53,879 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-20 09:17:53,880 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-20 09:17:53,881 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-20 09:17:53,882 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-20 09:17:53,883 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-20 09:17:53,884 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-20 09:17:53,885 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-20 09:17:53,886 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-20 09:17:53,887 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-20 09:17:53,888 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-20 09:29:37,617 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-20 09:29:37,669 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-20 09:29:37,763 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 09:29:37,764 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 09:29:37,768 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-20 09:29:37,829 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-20 09:29:37,841 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-20 09:29:37,843 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-20 09:29:37,843 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-20 09:29:37,843 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 09:29:37,844 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 09:29:37,844 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 09:29:37,844 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 09:29:37,849 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-20 09:29:37,849 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 09:29:37,850 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 09:29:37,888 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-20 09:29:37,900 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,900 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,900 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,901 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,901 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,901 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,901 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 09:29:37,946 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-20 09:29:37,948 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-20 09:29:37,965 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-20 09:29:37,969 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-20 09:29:37,991 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-20 09:29:37,993 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 09:29:37,994 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 09:29:38,001 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-20 09:29:38,002 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-20 09:29:38,002 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-20 09:29:38,003 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-20 09:29:38,006 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 09:29:38,007 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 09:29:38,008 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 09:29:38,008 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 09:29:38,466 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-20 09:29:38,470 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-20 09:29:38,470 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-20 09:29:38,471 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-20 09:29:38,471 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-20 09:29:38,472 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-20 09:29:38,473 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-20 09:29:38,474 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-20 09:29:38,475 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-20 09:29:38,476 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-20 09:29:38,477 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-20 09:29:38,478 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-20 09:29:38,479 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-20 09:29:38,480 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-20 09:29:38,481 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-20 09:29:38,482 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-20 09:29:38,483 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-20 09:29:38,484 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-20 09:29:38,485 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-20 09:29:38,486 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-20 09:29:38,487 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-20 09:29:38,487 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-20 09:29:38,487 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-20 09:29:38,487 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-20 09:29:38,487 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-20 09:29:38,488 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-20 09:29:38,489 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-20 09:29:38,490 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-20 09:29:38,491 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-20 09:29:38,492 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-20 09:29:38,493 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-20 09:29:38,494 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-20 09:29:38,495 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-20 09:29:38,496 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-20 09:29:38,497 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-20 09:29:38,498 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-20 09:29:38,499 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-20 09:29:38,500 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-20 09:29:38,501 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-20 09:29:38,502 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-20 09:29:38,503 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-20 09:29:38,504 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-20 09:29:38,505 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-20 09:29:38,506 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-20 09:29:38,507 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-20 09:29:38,508 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-20 09:29:38,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-20 09:29:38,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-20 09:29:38,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-20 09:29:38,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-20 09:29:38,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-20 09:29:38,509 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-20 09:29:38,511 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-20 09:29:38,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-20 09:29:38,512 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-20 09:29:38,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-20 09:29:38,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-20 09:29:38,513 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-20 09:29:38,515 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-20 09:29:38,516 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-20 09:29:38,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-20 09:29:38,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-20 09:29:38,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-20 09:29:38,517 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-20 09:29:38,518 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-20 09:29:38,519 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-20 09:29:38,520 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-20 09:29:38,521 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-20 09:29:38,522 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-20 09:29:38,523 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-20 09:29:38,524 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-20 09:29:38,525 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-20 09:29:38,526 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-20 09:29:38,527 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-20 09:29:38,528 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-20 09:29:38,529 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-20 09:29:38,530 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-20 09:29:38,531 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-20 09:29:38,532 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-20 09:29:38,533 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-20 09:29:38,534 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-20 09:29:38,535 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-20 09:29:38,536 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-20 09:29:38,537 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-20 09:29:38,538 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-20 09:29:38,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-20 09:29:38,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-20 09:29:38,539 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-20 10:02:01,093 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-20 10:02:01,138 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-20 10:02:01,238 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 10:02:01,239 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-20 10:02:01,244 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-20 10:02:01,311 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-20 10:02:01,322 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-20 10:02:01,324 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-20 10:02:01,325 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-20 10:02:01,325 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 10:02:01,325 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-20 10:02:01,326 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 10:02:01,326 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-20 10:02:01,331 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-20 10:02:01,331 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 10:02:01,331 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-20 10:02:01,371 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-20 10:02:01,383 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,383 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,384 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,385 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-20 10:02:01,430 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-20 10:02:01,432 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-20 10:02:01,453 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-20 10:02:01,458 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-20 10:02:01,482 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-20 10:02:01,485 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 10:02:01,485 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-20 10:02:01,493 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-20 10:02:01,494 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-20 10:02:01,494 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-20 10:02:01,495 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-20 10:02:01,499 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 10:02:01,499 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-20 10:02:01,500 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 10:02:01,500 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-20 10:02:01,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-20 10:02:01,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-20 10:02:01,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-20 10:02:01,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-20 10:02:01,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-20 10:02:01,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-20 10:02:01,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-20 10:02:01,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-20 10:02:01,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-20 10:02:01,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-20 10:02:01,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-20 10:02:01,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-20 10:02:01,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-20 10:02:01,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-20 10:02:01,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-20 10:02:01,981 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-20 10:02:01,982 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-20 10:02:01,983 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-20 10:02:01,984 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-20 10:02:01,985 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-20 10:02:01,986 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-20 10:02:01,987 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-20 10:02:01,988 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-20 10:02:01,989 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-20 10:02:01,990 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-20 10:02:01,991 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-20 10:02:01,992 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-20 10:02:01,993 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-20 10:02:01,994 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-20 10:02:01,995 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-20 10:02:01,996 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-20 10:02:01,997 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-20 10:02:01,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-20 10:02:01,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-20 10:02:01,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-20 10:02:01,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-20 10:02:01,998 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-20 10:02:01,999 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-20 10:02:02,000 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-20 10:02:02,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-20 10:02:02,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-20 10:02:02,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-20 10:02:02,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-20 10:02:02,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-20 10:02:02,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-20 10:02:02,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-20 10:02:02,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-20 10:02:02,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-20 10:02:02,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-20 10:02:02,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-20 10:02:02,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-20 10:02:02,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-20 10:02:02,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-20 10:02:02,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-20 10:02:02,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-20 10:02:02,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-20 10:02:02,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-20 10:02:02,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-20 10:02:02,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-20 10:02:02,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-20 10:02:02,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-20 10:02:02,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-20 10:02:02,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-20 10:02:02,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-20 10:02:02,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-20 10:02:02,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-20 10:02:02,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-20 10:02:02,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-20 10:02:02,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-20 10:02:02,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-20 10:02:02,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-20 10:02:02,026 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-20 10:02:02,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
+2022-05-25 16:27:32,145 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C7H11N2O5R(C2H2NOR)n
+2022-05-25 16:27:32,200 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C4H6N2O2SR2)2
+2022-05-25 16:27:32,314 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-25 16:27:32,315 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C36H64N2O17P2(C5H8)n
+2022-05-25 16:27:32,320 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C8H13NO5)n
+2022-05-25 16:27:32,392 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O7P2(C5H8)n
+2022-05-25 16:27:32,401 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O7P2(C5H8)n
+2022-05-25 16:27:32,403 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H47O9P(C5H8)n
+2022-05-25 16:27:32,403 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H36O(C5H8)n
+2022-05-25 16:27:32,404 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-25 16:27:32,404 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H46O9P(C5H8)n
+2022-05-25 16:27:32,404 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-25 16:27:32,405 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H35O4P(C5H8)n
+2022-05-25 16:27:32,408 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H34O.(C5H8)n
+2022-05-25 16:27:32,409 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-25 16:27:32,409 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C15H25O7P2
+2022-05-25 16:27:32,438 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)8R
+2022-05-25 16:27:32,447 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,447 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,448 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,448 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,448 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,448 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,449 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C6H10O5)12R
+2022-05-25 16:27:32,492 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C48H84N2O27P2(C5H8)n
+2022-05-25 16:27:32,494 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C66H114N2O42P2(C5H8)n
+2022-05-25 16:27:32,509 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C42H72N2O22P2
+2022-05-25 16:27:32,514 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: (C5H8)n.C28H49NO12P2
+2022-05-25 16:27:32,535 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H5NO2(C8H12N2O4S)n
+2022-05-25 16:27:32,537 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-25 16:27:32,538 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C2H4NO2R(C2H2NOR)n
+2022-05-25 16:27:32,545 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C11H15N5O6SR4(C2H2NOR)n
+2022-05-25 16:27:32,546 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C26H39N5O6SR4(C2H2NOR)n
+2022-05-25 16:27:32,546 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C20H33N2O3SR(C2H2NOR)n
+2022-05-25 16:27:32,546 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C21H35N2O3SR(C2H2NOR)n
+2022-05-25 16:27:32,550 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-25 16:27:32,550 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H18O4(C5H8)n
+2022-05-25 16:27:32,551 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-25 16:27:32,551 ERROR o.s.j.e.f.FBCSpeciesPlugin [main] Skipped invalid chemical formula: C14H20O4(C5H8)n
+2022-05-25 16:27:32,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R__3SALAASPm'.
+2022-05-25 16:27:32,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R__4MOPt2im'.
+2022-05-25 16:27:32,964 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R__5FTHFt2'.
+2022-05-25 16:27:32,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2AMADPTm'.
+2022-05-25 16:27:32,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_2OXOADPTm'.
+2022-05-25 16:27:32,965 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_35CGMPtn'.
+2022-05-25 16:27:32,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_4ABUTtm'.
+2022-05-25 16:27:32,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_4ABZt'.
+2022-05-25 16:27:32,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ABUTt4_2_r'.
+2022-05-25 16:27:32,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_accoatm'.
+2022-05-25 16:27:32,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ACCOAtn'.
+2022-05-25 16:27:32,966 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_ACHtn'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ACRNtm'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Adenosine_transport'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ADNtm'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AHCYStn'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AKGMALtm'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_AKGt4_3'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Alanine_transport'.
+2022-05-25 16:27:32,967 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_AMETt2m'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMETtn'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ammonia_transport'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_AMMONIAtm'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_AMMONIAtn'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_anACRNtm'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ARCRNtm'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Arginine_transport'.
+2022-05-25 16:27:32,968 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ARGtm'.
+2022-05-25 16:27:32,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0001'.
+2022-05-25 16:27:32,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0002'.
+2022-05-25 16:27:32,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0003'.
+2022-05-25 16:27:32,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0004'.
+2022-05-25 16:27:32,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0005'.
+2022-05-25 16:27:32,969 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0006'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0007'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0008'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0009'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0010'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0011'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0012'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0013'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0014'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0015'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0016'.
+2022-05-25 16:27:32,970 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0017'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0018'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0019'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0020'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0021'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0022'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0023'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0024'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0025'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0026'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0027'.
+2022-05-25 16:27:32,971 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0028'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0029'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0030'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0031'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0032'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0033'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0034'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0035'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0036'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0037'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0038'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0039'.
+2022-05-25 16:27:32,972 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0040'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0041'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0042'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0043'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0044'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0045'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0046'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0047'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0048'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0049'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0050'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0051'.
+2022-05-25 16:27:32,973 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0052'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0053'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0054'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0055'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0056'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0057'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0058'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0059'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0060'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0061'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0062'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0063'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0064'.
+2022-05-25 16:27:32,974 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0065'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0066'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0067'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0068'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0069'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0070'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0071'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0072'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0073'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0074'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0075'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0076'.
+2022-05-25 16:27:32,975 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0077'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0078'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0079'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0080'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0081'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0082'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0083'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0084'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0085'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0086'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0087'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0088'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0089'.
+2022-05-25 16:27:32,976 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0090'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0091'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0092'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0093'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0094'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0095'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0096'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0097'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0098'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0099'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0100'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0101'.
+2022-05-25 16:27:32,977 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0102'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0103'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0104'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0105'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0106'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0107'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0108'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0109'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0110'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0111'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0112'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0113'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0114'.
+2022-05-25 16:27:32,978 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0115'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0116'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0117'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0118'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0119'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0120'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0121'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0122'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0123'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0124'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0125'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0126'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0127'.
+2022-05-25 16:27:32,979 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0128'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0129'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0130'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0131'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0132'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0133'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0134'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0135'.
+2022-05-25 16:27:32,980 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0136'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0137'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0138'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0139'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0140'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0141'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0142'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0143'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0144'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0145'.
+2022-05-25 16:27:33,001 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0146'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_ASCREXPORT0147'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Asparagine_transport'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Aspartate_transport'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPDt6'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ASPGLUm'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ASPt6'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_ATPtm'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_ATPtn'.
+2022-05-25 16:27:33,002 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_BCRNtm'.
+2022-05-25 16:27:33,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nm' of reaction 'R_BIO0099'.
+2022-05-25 16:27:33,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_biotin_transport'.
+2022-05-25 16:27:33,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0014'.
+2022-05-25 16:27:33,003 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0015'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0016'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0017'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0018'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0019'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0020'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0021'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0022'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0023'.
+2022-05-25 16:27:33,004 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0024'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0025'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CARNSHUT0026'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CAt7r'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CDPDAGtm'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CeCRNtm'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CGLYt3_2_'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CHLtm'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Choline_transport'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CHOLt4'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CHOLtn'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_CITRtm'.
+2022-05-25 16:27:33,005 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CITt4_2'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtam'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CITtbm'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CMPtm'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_CO2_transport'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CO2tm'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_CO2tn'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_COAtm'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_COAtn'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CRNATBtc'.
+2022-05-25 16:27:33,006 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CRNtim'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CTPtn'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYANtm'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYSSNAT4te'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Cysteine_transport'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Cystm'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_CYTDt2r'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_CYTDtm'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_CYTDtn'.
+2022-05-25 16:27:33,007 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_cytidine_transport'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DATPtn'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DCRNtm'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DCTPtn'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0008'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0009'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0010'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0011'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0014'.
+2022-05-25 16:27:33,008 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0015'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0018'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0020'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0022'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0025'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DGR0027'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DGTPtn'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DIDPtn'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DITPtn'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DNADtn'.
+2022-05-25 16:27:33,009 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt10m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt11m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt12m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt13m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt14m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt15m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt16m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt17m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt18m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt19m'.
+2022-05-25 16:27:33,010 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt1m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt20m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt21m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt22m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt23m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt26m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt27m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt28m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt29m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt2m'.
+2022-05-25 16:27:33,011 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt30m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt31m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt32m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt33m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt34m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt35m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt36m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt37m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt38m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt39m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt3m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt40m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt41m'.
+2022-05-25 16:27:33,012 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt42m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt43m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt51m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt52m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt53m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt54m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt55m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt56m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt57m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DNDPt58m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_DNDPt59m'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_DoCRNtm'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAENT4tc'.
+2022-05-25 16:27:33,013 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_DOPAt4_2_r'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTDPtn'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DTTPtn'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUDPtn'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DUMPtn'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_DURItn'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_for_t'.
+2022-05-25 16:27:33,014 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Ex_gthrd_t'.
+2022-05-25 16:27:33,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_FOLOAT1tc'.
+2022-05-25 16:27:33,015 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FORt2m'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_FORtrn'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO3tm'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMSO4tm'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMtm'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_FUMTSULtm'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GALt1r'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLCt1r'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLUt2m'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GLUt6'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamate_transport'.
+2022-05-25 16:27:33,016 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glutamine_transport'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYC3Ptm'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Glycine_transport'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GLYCtm'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GMPtn'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_GSNt2r'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_GSNtm'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_GTPtn'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Guanosine_transport'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_H2O2tn'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_H2OGLYAQPt'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_H2Otm'.
+2022-05-25 16:27:33,017 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_H2Otn'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HCO3_NAt'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_HCRNtm'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_HDCAFAPMtc'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Histidine_transport'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Htm'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_Htn'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_HX2m'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_IDPtn'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ILEB0AT2tc'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ILEt5m'.
+2022-05-25 16:27:33,018 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_INSt2'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Isoleucine_transport'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_KCCt'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_Lact2r'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LCRNtm'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LEUB0AT2tc'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Leucine_transport'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_LEUt5m'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_LGNCFATtc'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_LIPOIC_ACID_transport'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Lysine_transport'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_LYStm'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_LYStn'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO3tm'.
+2022-05-25 16:27:33,019 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSO4tm'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALSULtm'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_MALtm'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_MANt1r'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MCRNtm'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_METB0AT2tc'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Methionine_transport'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_METrRNAtm'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0001'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0002'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0003'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0004'.
+2022-05-25 16:27:33,020 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_MITOIMPORT0005'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_myoinositol_transport'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_N_Acetylglucosamine_transport'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Na_H_Exchange_reactions'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadhtm'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadphtm'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADPHtn'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadptm'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_nadtm'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_NADtn'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NCKt'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_NH3t3r'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacin_transport'.
+2022-05-25 16:27:33,021 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Niacinamide_transport'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NICRNTtn'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCC2t'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_NKCCt'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_NMNtn'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_O2_transport'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_O2Stm'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2Stn'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_O2tn'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_OCDCAFAPMtc'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt3m'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_ORNt4m'.
+2022-05-25 16:27:33,022 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_ORNtiDF'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_OXAHCOtex'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Oxthioredtn'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_oxtm'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAI5pLtn'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PAILtn'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pantothenate_transport'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PCRNtm'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0006'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0007'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PEPCPSBIOSYNTH0008'.
+2022-05-25 16:27:33,023 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PEPLYStn'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Peptides_transport'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_PHEMEe'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_PHEMEtm'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Phenylalanine_transport'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Pi_transport'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PIt2m'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt7'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PIt8'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'nc' of reaction 'R_PItn'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPItn'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_PPPItn'.
+2022-05-25 16:27:33,024 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_PROB0AT2tc'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proline_transport'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PROtm'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Proton_transport'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydamt'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxnt'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_pydxt'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_PYRt2m'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r0941'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1291'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r1435'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2408'.
+2022-05-25 16:27:33,025 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_r2472'.
+2022-05-25 16:27:33,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Riboflavin_transport'.
+2022-05-25 16:27:33,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM01868'.
+2022-05-25 16:27:33,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RM08657'.
+2022-05-25 16:27:33,027 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Rthioredtn'.
+2022-05-25 16:27:33,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN_9927_2'.
+2022-05-25 16:27:33,028 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXN0_6491_c'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_RXtm'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_SecrRNAtm'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Serine_transport'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SERLYSNaex'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Sitosterol_transport'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_SO4HCOtex'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_solm'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SRTNENT4tc'.
+2022-05-25 16:27:33,029 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_SUCCt2m'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_SUCCt4_2'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0333'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0342'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0346'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0352'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0358'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0368'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0370'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0374'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0376'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0379'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0392'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0399'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0416'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0417'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0437'.
+2022-05-25 16:27:33,030 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0441'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0447'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0457'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0459'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0460'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0464'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0474'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0475'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0482'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0484'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0486'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0487'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0504'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0507'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0514'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0533'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0536'.
+2022-05-25 16:27:33,031 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0544'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0559'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0571'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0573'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0576'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0586'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0591'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0597'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0602'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0611'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0612'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0614'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0615'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0618'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0619'.
+2022-05-25 16:27:33,032 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0621'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0622'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0627'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0644'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0648'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0658'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0660'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0670'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0673'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0674'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0694'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0706'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0709'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0710'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0712'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0716'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0719'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0723'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0726'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0729'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0732'.
+2022-05-25 16:27:33,033 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0739'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0745'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0750'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0752'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0768'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0777'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0781'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE0785'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0788'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0795'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0797'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE0825'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1117'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1121'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1124'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1127'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1130'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1133'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1143'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1148'.
+2022-05-25 16:27:33,034 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1149'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1150'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1154'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1156'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1157'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1158'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1159'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1161'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1165'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1168'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1170'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1179'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1185'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1186'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1192'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1204'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1206'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1208'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1211'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1297'.
+2022-05-25 16:27:33,035 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1300'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1302'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1305'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1307'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE1308'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1309'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE1311'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE2001'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5007'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5008'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5016'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5021'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5022'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5024'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5031'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5035'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5036'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5038'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5040'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5041'.
+2022-05-25 16:27:33,036 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5042'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5043'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5045'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5046'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5063'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5066'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5069'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5070'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5071'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5072'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5073'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5074'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5075'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5076'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5077'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5078'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5079'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5082'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5083'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5084'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5086'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5092'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5093'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5094'.
+2022-05-25 16:27:33,037 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5501'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TCE5502'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE5504'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6001'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE6002'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7572'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7666'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE7728'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_TCE9072'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0062'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0069'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0070'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0072'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0073'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0078'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0080'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0084'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0090'.
+2022-05-25 16:27:33,038 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0092'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0093'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0094'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0095'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0098'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0101'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0106'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0107'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0116'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0119'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0127'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0129'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0130'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0131'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0134'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0141'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0144'.
+2022-05-25 16:27:33,039 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0145'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0151'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0153'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0160'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0162'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0163'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0167'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0168'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0169'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0174'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0177'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0183'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0189'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0190'.
+2022-05-25 16:27:33,040 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0192'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0195'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0199'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0200'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0206'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0210'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0213'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0218'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0219'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0224'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM0316'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM0317'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1027'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1031'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1033'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1034'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1035'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1037'.
+2022-05-25 16:27:33,041 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1039'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1042'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1043'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1044'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1045'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1047'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1048'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1051'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1053'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1054'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1055'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1058'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1059'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1061'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1062'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1063'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1067'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1069'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1070'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1071'.
+2022-05-25 16:27:33,042 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1072'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1073'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1075'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1076'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1077'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1078'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1080'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1089'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1091'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1095'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM1096'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1097'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1098'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1102'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1104'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1107'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1109'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1279'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1281'.
+2022-05-25 16:27:33,043 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM1289'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM2006'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5004'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5005'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5006'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5007'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5008'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5018'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5030'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5032'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5034'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5040'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5047'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'mc' of reaction 'R_TCM5058'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5059'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5060'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5061'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5062'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5064'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5065'.
+2022-05-25 16:27:33,044 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_TCM5067'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_THF_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_THFtm'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_thiamin_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_THMDt2r'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Threonine_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Thymine_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tryptophan_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_TTDCAt'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Tyrosine_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_tyrtm'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiqui8tm'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_Ubiquinol8tm'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Urea_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Uridine_transport'.
+2022-05-25 16:27:33,045 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_URIt2r'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_Uritn'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_UTPtm'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cn' of reaction 'R_UTPtn'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_VALB0AT2tc'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Valine_transport'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'cm' of reaction 'R_VALt5m'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Vitamin_B12_transport'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ce' of reaction 'R_Water_transport'.
+2022-05-25 16:27:33,046 WARN o.s.j.x.p.SBMLCoreParser [main] No Compartment matches the compartmentID 'ec' of reaction 'R_XYLt'.
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index 5d32a9cfa..ebcab2c97 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -36,7 +36,6 @@
package fr.inrae.toulouse.metexplore.met4j_graph.computation.connect;
import java.util.*;
-import java.util.stream.Collectors;
import fr.inrae.toulouse.metexplore.met4j_graph.core.BioGraph;
import fr.inrae.toulouse.metexplore.met4j_graph.core.BioPath;
@@ -46,8 +45,9 @@ import fr.inrae.toulouse.metexplore.met4j_graph.core.compressed.PathEdge;
import fr.inrae.toulouse.metexplore.met4j_core.biodata.BioEntity;
import org.jgrapht.GraphPath;
import org.jgrapht.alg.interfaces.ManyToManyShortestPathsAlgorithm;
+import org.jgrapht.alg.shortestpath.BidirectionalDijkstraShortestPath;
import org.jgrapht.alg.shortestpath.DijkstraManyToManyShortestPaths;
-import org.jgrapht.alg.util.Pair;
+import org.jgrapht.graph.AsUndirectedGraph;
/**
* Class to use the shortest paths in a graph
@@ -272,6 +272,12 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @return the list of edges involved in the shortest path union
*/
public List<BioPath<V,E>> getShortestPathsUnionList(Set<V> startNodes, Set<V> targetNodes){
+ if(!g.vertexSet().containsAll(startNodes)){
+ throw(new IllegalArgumentException("Error: start node not found in graph"));
+ }
+ if(!g.vertexSet().containsAll(targetNodes)){
+ throw(new IllegalArgumentException("Error: end node not found in graph"));
+ }
DijkstraManyToManyShortestPaths<V,E> spComputor = new DijkstraManyToManyShortestPaths<>(g);
ManyToManyShortestPathsAlgorithm.ManyToManyShortestPaths<V, E> paths = spComputor.getManyToManyPaths(startNodes,targetNodes);
List<BioPath<V,E>> outputPaths = new ArrayList<>();
diff --git a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
index 262d00cc1..70a24c979 100644
--- a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
+++ b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
@@ -413,7 +413,7 @@ public class TestShortestPaths {
HashSet<BioMetabolite> noi = new HashSet<>();
noi.add(a);noi.add(b);noi.add(c);noi.add(d);noi.add(e);
ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g);
-
+ g.setEdgeWeight(bc, 1000.0);
CompressedGraph<BioMetabolite, ReactionEdge, CompoundGraph> cg = pathSearch.getMetricClosureGraph(noi,noi,false);
for(BioMetabolite e1 : noi){
@@ -427,7 +427,6 @@ public class TestShortestPaths {
// }
assertTrue("no link between two connected terminal node", cg.containsEdge(e1, e2));
assertEquals("wrong edge weight in Metric closure graph",path.getLength() , cg.getEdgeWeight(cg.getEdge(e1, e2)), Double.MIN_VALUE);
-
assertTrue("wrong path",path.getEdgeList().containsAll(cg.getEdge(e1, e2).getPath().getEdgeList()));
}
--
GitLab
From 45f245a0b109082183326fcc37a3ff3a7fa6fb60 Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 15:04:45 +0200
Subject: [PATCH 08/12] set as Unidrected as shortest path parameter
alows to compute all to all in undirected case
---
.../computation/connect/ShortestPath.java | 24 +++++++++++++++----
.../met4j_graph/TestShortestPaths.java | 22 ++++++++---------
2 files changed, 31 insertions(+), 15 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
index ebcab2c97..bdaafb888 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/ShortestPath.java
@@ -45,7 +45,6 @@ import fr.inrae.toulouse.metexplore.met4j_graph.core.compressed.PathEdge;
import fr.inrae.toulouse.metexplore.met4j_core.biodata.BioEntity;
import org.jgrapht.GraphPath;
import org.jgrapht.alg.interfaces.ManyToManyShortestPathsAlgorithm;
-import org.jgrapht.alg.shortestpath.BidirectionalDijkstraShortestPath;
import org.jgrapht.alg.shortestpath.DijkstraManyToManyShortestPaths;
import org.jgrapht.graph.AsUndirectedGraph;
@@ -60,6 +59,18 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
/** The graph. */
public final G g;
+ public boolean asUndirected = false;
+ public boolean isUndirected() {
+ return asUndirected;
+ }
+
+ public void asUndirected() {
+ this.asUndirected = true;
+ }
+ public void asDirected() {
+ this.asUndirected = false;
+ }
+
/**
* Instantiates a new shortest paths computor.
*
@@ -69,6 +80,11 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
this.g=g;
}
+ public ShortestPath(G g, boolean directed) {
+ this.g=g;
+ asUndirected = !directed;
+ }
+
/**
* compute the shortest paths (or lightest paths if the graph is weighted) between 2 nodes
*
@@ -79,6 +95,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @throws java.lang.IllegalArgumentException if any.
*/
public BioPath<V, E> getShortest(V start, V end) throws IllegalArgumentException{
+ if(asUndirected) return getShortestAsUndirected(start,end);
if(!g.containsVertex(start)){
throw(new IllegalArgumentException("Error: start node "+start.getId()+" not found in graph"));
}
@@ -142,7 +159,6 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
return new BioPath<>(g, start, end, sp, weight);
}
-
/**
* compute the shortest paths (or lightest paths if the graph is weighted) between 2 nodes as if the graph was undirected
*
@@ -152,7 +168,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
* @throws java.lang.IllegalArgumentException if any.
* @throws java.lang.IllegalArgumentException if any.
*/
- public BioPath<V, E> getShortestAsUndirected(V start, V end) throws IllegalArgumentException{
+ private BioPath<V, E> getShortestAsUndirected(V start, V end) throws IllegalArgumentException{
if(!g.containsVertex(start)){
throw(new IllegalArgumentException("Error: start node "+start.getId()+" not found in graph"));
}
@@ -278,7 +294,7 @@ public class ShortestPath<V extends BioEntity,E extends Edge<V>, G extends BioGr
if(!g.vertexSet().containsAll(targetNodes)){
throw(new IllegalArgumentException("Error: end node not found in graph"));
}
- DijkstraManyToManyShortestPaths<V,E> spComputor = new DijkstraManyToManyShortestPaths<>(g);
+ DijkstraManyToManyShortestPaths<V,E> spComputor = asUndirected ? new DijkstraManyToManyShortestPaths<>(new AsUndirectedGraph<V,E>(g)) : new DijkstraManyToManyShortestPaths<>(g);
ManyToManyShortestPathsAlgorithm.ManyToManyShortestPaths<V, E> paths = spComputor.getManyToManyPaths(startNodes,targetNodes);
List<BioPath<V,E>> outputPaths = new ArrayList<>();
for(V start : startNodes){
diff --git a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
index 70a24c979..34efcc9f7 100644
--- a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
+++ b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
@@ -169,23 +169,23 @@ public class TestShortestPaths {
@Test(expected=IllegalArgumentException.class)
public void testGetUndirectedShortestNoStartException() {
- ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g);
- BioPath<BioMetabolite,ReactionEdge> path = pathSearch.getShortestAsUndirected(new BioMetabolite("u"), c);
+ ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g,false);
+ BioPath<BioMetabolite,ReactionEdge> path = pathSearch.getShortest(new BioMetabolite("u"), c);
System.out.println(path);
}
@Test(expected=IllegalArgumentException.class)
public void testGetUndirectedShortestNoTargetException() {
- ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g);
- BioPath<BioMetabolite,ReactionEdge> path = pathSearch.getShortestAsUndirected(a, new BioMetabolite("u"));
+ ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g,false);
+ BioPath<BioMetabolite,ReactionEdge> path = pathSearch.getShortest(a, new BioMetabolite("u"));
System.out.println(path);
}
@Test
public void testGetShortestundirected() {
ReactionEdge[] expectedPath = {bc, ab};
- ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g);
- BioPath<BioMetabolite,ReactionEdge> path = pathSearch.getShortestAsUndirected(c, a);
+ ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new ShortestPath<>(g, false);
+ BioPath<BioMetabolite,ReactionEdge> path = pathSearch.getShortest(c, a);
assertNotNull(path);
List<ReactionEdge> sp = path.getEdgeList();
assertTrue("wrong path", Arrays.asList(expectedPath).containsAll(sp));
@@ -194,7 +194,7 @@ public class TestShortestPaths {
g.setEdgeWeight(bc, 1000.0);
g.setEdgeWeight(ab, 1000.0);
ReactionEdge[] expectedLightestPath = {fc, ef, de, ad};
- BioPath<BioMetabolite,ReactionEdge> path2 =pathSearch.getShortestAsUndirected(c, a);
+ BioPath<BioMetabolite,ReactionEdge> path2 =pathSearch.getShortest(c, a);
assertNotNull(path2);
List<ReactionEdge> res = path2.getEdgeList();
assertTrue("wrong weighted path", Arrays.asList(expectedLightestPath).containsAll(res));
@@ -468,7 +468,7 @@ public class TestShortestPaths {
CompoundGraph g2 =new CompoundGraph(g);
ReactionEdge ab2 = new ReactionEdge(a,b,new BioReaction("ab"));g2.addEdge(a, b, ab2);g2.setEdgeWeight(ab2, 100000.0);
ReactionEdge ba = new ReactionEdge(b,a,new BioReaction("ab"));g2.addEdge(b, a, ba);g2.setEdgeWeight(ba, 100000.0);
- ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> spComputor = new ShortestPath<>(g);
+ ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> spComputor = new ShortestPath<>(g, false);
ComputeAdjacencyMatrix builder = new ComputeAdjacencyMatrix(g2);
builder.asUndirected();
builder.parallelEdgeWeightsHandling((a,b)->Math.min(a,b));
@@ -483,7 +483,7 @@ public class TestShortestPaths {
assertEquals(0.0, res.get(a).get(b), Double.MIN_VALUE);
}else{
assertEquals(res.get(a).get(b), res.get(b).get(a));//check if symmetric
- BioPath<BioMetabolite, ReactionEdge> sp = spComputor.getShortestAsUndirected(g.getVertex(a), g.getVertex(b));
+ BioPath<BioMetabolite, ReactionEdge> sp = spComputor.getShortest(g.getVertex(a), g.getVertex(b));
double weight = (sp==null) ? Double.POSITIVE_INFINITY : sp.getWeight();
assertEquals(weight, res.get(a).get(b), Double.MIN_VALUE);
}
@@ -496,7 +496,7 @@ public class TestShortestPaths {
CompoundGraph g2 =new CompoundGraph(g);
ReactionEdge ab2 = new ReactionEdge(a,b,new BioReaction("ab"));g2.addEdge(a, b, ab2);g2.setEdgeWeight(ab2, 100000.0);
ReactionEdge ba = new ReactionEdge(b,a,new BioReaction("ab"));g2.addEdge(b, a, ba);g2.setEdgeWeight(ba, 100000.0);
- ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> spComputor = new ShortestPath<>(g);
+ ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> spComputor = new ShortestPath<>(g, false);
ComputeAdjacencyMatrix builder = new ComputeAdjacencyMatrix(g2);
builder.asUndirected();
builder.parallelEdgeWeightsHandling((a,b)->Math.min(a,b));
@@ -510,7 +510,7 @@ public class TestShortestPaths {
assertNull(res.get(a).get(b));
}else{
assertEquals(res.get(a).get(b).getLength(), res.get(b).get(a).getLength());//check if symmetric
- BioPath<BioMetabolite, ReactionEdge> sp = spComputor.getShortestAsUndirected(g.getVertex(a), g.getVertex(b));
+ BioPath<BioMetabolite, ReactionEdge> sp = spComputor.getShortest(g.getVertex(a), g.getVertex(b));
double length = (sp==null) ? Double.POSITIVE_INFINITY : sp.getLength();
assertEquals(length, res.get(a).get(b).getLength(), Double.MIN_VALUE);
}
--
GitLab
From ec41624b5a73bccfe40eb8430d4cfa80fdcf5d6a Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 15:05:44 +0200
Subject: [PATCH 09/12] add undirected case in kshortestpath
---
.../computation/connect/KShortestPath.java | 14 +++++++++++++-
1 file changed, 13 insertions(+), 1 deletion(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/KShortestPath.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/KShortestPath.java
index e8d0ac448..6d9c1e3b8 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/KShortestPath.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/KShortestPath.java
@@ -59,6 +59,11 @@ public class KShortestPath<V extends BioEntity, E extends Edge<V>, G extends Bio
/** The graph. */
public final G g;
+
+ public final boolean asUndirected;
+ public boolean isUndirected() {
+ return asUndirected;
+ }
/**
* Instantiates a new K-shortest paths computor.
@@ -67,7 +72,14 @@ public class KShortestPath<V extends BioEntity, E extends Edge<V>, G extends Bio
*/
public KShortestPath(G g) {
this.g=g;
+ this.asUndirected=false;
+ }
+
+ public KShortestPath(G g, boolean directed) {
+ this.g=g;
+ this.asUndirected=!directed;
}
+
/**
* compute the list of edges from the union of all K-shortest paths between all nodes in a given set
@@ -110,7 +122,7 @@ public class KShortestPath<V extends BioEntity, E extends Edge<V>, G extends Bio
*/
public List<BioPath<V,E>> getKShortest(V start, V end, int k){
List<BioPath<V,E>> kPaths = new ArrayList<>();
- ShortestPath<V, E, G> sp = new ShortestPath<>(g);
+ ShortestPath<V, E, G> sp = new ShortestPath<>(g,!asUndirected);
BioPath<V,E> shortest = sp.getShortest(start, end);
if(shortest==null) return new ArrayList<>();
kPaths.add(shortest);
--
GitLab
From 6a1e169a12c5c02c3efc7a7e914ac8ef2279f4a6 Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 15:06:15 +0200
Subject: [PATCH 10/12] [toolbox] add undirected option in subgraph extraction
---
.../met4j_toolbox/networkAnalysis/ExtractSubNetwork.java | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java b/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java
index 9371b1c1c..7db0cb7d1 100644
--- a/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java
+++ b/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java
@@ -50,8 +50,8 @@ public class ExtractSubNetwork extends AbstractMet4jApplication {
@Option(name = "-sw", aliases = {"--chemSimWeights"}, usage = "penalize traversal of non-relevant edges by using chemical similarity weighting", forbids = {"-dw", "-cw"})
public Boolean chemicalSim = false;
- //@Option(name = "-u", aliases = {"--undirected"}, usage = "Ignore reaction direction")
- //public Boolean undirected = false;
+ @Option(name = "-u", aliases = {"--undirected"}, usage = "Ignore reaction direction")
+ public Boolean undirected = false;
@Option(name = "-k", usage = "Extract k-shortest paths", forbids = {"-st"})
public int k = 1;
@@ -110,11 +110,11 @@ public class ExtractSubNetwork extends AbstractMet4jApplication {
List<ReactionEdge> stEdges = stComp.getSteinerTreeList(sources, targets, (degree || weightFile != null));
subnet = factory.createGraphFromEdgeList(stEdges);
} else if (k > 1) {
- KShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> kspComp = new KShortestPath<>(graph);
+ KShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> kspComp = new KShortestPath<>(graph, !undirected);
List<BioPath<BioMetabolite, ReactionEdge>> kspPath = kspComp.getKShortestPathsUnionList(sources, targets, k);
subnet = factory.createGraphFromPathList(kspPath);
} else {
- ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> spComp = new ShortestPath<>(graph);
+ ShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> spComp = new ShortestPath<>(graph, !undirected);
List<BioPath<BioMetabolite, ReactionEdge>> spPath = spComp.getShortestPathsUnionList(sources, targets);
subnet = factory.createGraphFromPathList(spPath);
}
--
GitLab
From 10648973aa9a39932042961943dbdeea1fb379c3 Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 15:15:06 +0200
Subject: [PATCH 11/12] add test case for undirected kshortest
---
.../met4j_graph/TestShortestPaths.java | 16 ++++++++++++++++
1 file changed, 16 insertions(+)
diff --git a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
index 34efcc9f7..1cbf561f3 100644
--- a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
+++ b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestShortestPaths.java
@@ -269,6 +269,22 @@ public class TestShortestPaths {
assertTrue("wrong path", Arrays.asList(expectedPath).containsAll(res));
assertTrue("wrong path", res.containsAll(Arrays.asList(expectedPath)));
}
+
+ @Test
+ public void testGetKShortestUndirected() {
+ ReactionEdge[] expectedPath = {ad, de, ab, eb};
+
+// long start = System.nanoTime();
+ KShortestPath<BioMetabolite, ReactionEdge, CompoundGraph> pathSearch = new KShortestPath<>(g, false);
+ List<BioPath<BioMetabolite,ReactionEdge>> kshort = pathSearch.getKShortest(g.getVertex("a"), g.getVertex("e"),2);
+ List<ReactionEdge> res = new ArrayList<>();
+ for(BioPath<BioMetabolite,ReactionEdge> p : kshort){
+ res.addAll(p.getEdgeList());
+ }
+
+ assertTrue("wrong path", Arrays.asList(expectedPath).containsAll(res));
+ assertTrue("wrong path", res.containsAll(Arrays.asList(expectedPath)));
+ }
/**
* Test the get k shortest union list.
--
GitLab
From 0c77c1a86a986b394b2cbf5675da64359ba04fb1 Mon Sep 17 00:00:00 2001
From: cfrainay <clement.frainay@inrae.fr>
Date: Mon, 30 May 2022 16:02:57 +0200
Subject: [PATCH 12/12] create undirected case for steiner tree, add option to
extractionSubnet app
+ add test case
---
.../connect/SteinerTreeApprox.java | 11 ++++++++--
.../met4j_graph/TestSteinerTreeApprox.java | 22 +++++++++++++++++--
.../networkAnalysis/ExtractSubNetwork.java | 2 +-
3 files changed, 30 insertions(+), 5 deletions(-)
diff --git a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/SteinerTreeApprox.java b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/SteinerTreeApprox.java
index 9ee7d079b..55ca8c0b1 100644
--- a/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/SteinerTreeApprox.java
+++ b/met4j-graph/src/main/java/fr/inrae/toulouse/metexplore/met4j_graph/computation/connect/SteinerTreeApprox.java
@@ -63,6 +63,7 @@ public class SteinerTreeApprox<V extends BioEntity, E extends Edge<V>, G extends
/** if the graph should be treated as weighted or not **/
public boolean weighted = true;
+ public boolean undirected = false;
/**
* Instantiates a new steiner tree computor.
@@ -83,6 +84,12 @@ public class SteinerTreeApprox<V extends BioEntity, E extends Edge<V>, G extends
this.g=g;
this.weighted=weighted;
}
+
+ public SteinerTreeApprox(G g, boolean weighted, boolean directed) {
+ this.g=g;
+ this.weighted=weighted;
+ this.undirected=!directed;
+ }
/**
* Gets the steiner tree list.
@@ -102,7 +109,7 @@ public class SteinerTreeApprox<V extends BioEntity, E extends Edge<V>, G extends
terminal.removeAll(unfound);
ArrayList<E> list = new ArrayList<>();
- CompressedGraph<V, E, G> cg = (new ShortestPath<>(g)).getMetricClosureGraph(terminal, terminal, weighted);
+ CompressedGraph<V, E, G> cg = (new ShortestPath<>(g,!undirected)).getMetricClosureGraph(terminal, terminal, weighted);
KruskalMinimumSpanningTree<V, PathEdge<V,E>> kruskal = new KruskalMinimumSpanningTree<>(cg);
Set<PathEdge<V,E>> mst = kruskal.getSpanningTree().getEdges();
for(PathEdge<V,E> edge : mst){
@@ -137,7 +144,7 @@ public class SteinerTreeApprox<V extends BioEntity, E extends Edge<V>, G extends
endNodes.removeAll(unfound);
ArrayList<E> list = new ArrayList<>();
- DirectedWeightedMultigraph<V, PathEdge<V,E>> cg = (new ShortestPath<>(g)).getMetricClosureGraph(startNodes, endNodes, weighted);
+ DirectedWeightedMultigraph<V, PathEdge<V,E>> cg = (new ShortestPath<>(g,!undirected)).getMetricClosureGraph(startNodes, endNodes, weighted);
KruskalMinimumSpanningTree<V, PathEdge<V,E>> kruskal = new KruskalMinimumSpanningTree<>(cg);
Set<PathEdge<V,E>> mst = kruskal.getSpanningTree().getEdges();
for(PathEdge<V,E> edge : mst){
diff --git a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestSteinerTreeApprox.java b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestSteinerTreeApprox.java
index 85167a758..c4d87ffe6 100644
--- a/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestSteinerTreeApprox.java
+++ b/met4j-graph/src/test/java/fr/inrae/toulouse/metexplore/met4j_graph/TestSteinerTreeApprox.java
@@ -60,9 +60,9 @@ public class TestSteinerTreeApprox {
public static CompoundGraph g;
- public static BioMetabolite a,b,c,d,e,f,x,y,z;
+ public static BioMetabolite a,b,c,d,e,f,x,y,z,w;
- public static ReactionEdge az,zb,ab,xb,bc,cx,yx,ay,ea,ey,xd,ed,fe,df;
+ public static ReactionEdge az,zb,ab,xb,bc,cx,yx,ay,ea,ey,xd,ed,fe,df,aw,dw;
@BeforeClass
@@ -77,6 +77,7 @@ public class TestSteinerTreeApprox {
x = new BioMetabolite("x"); g.addVertex(x);
y = new BioMetabolite("y"); g.addVertex(y);
z = new BioMetabolite("z"); g.addVertex(z);
+ w = new BioMetabolite("w"); g.addVertex(w);
az = new ReactionEdge(a,z,new BioReaction("az"));g.addEdge(a, z, az);g.setEdgeWeight(az, 2);
zb = new ReactionEdge(z,b,new BioReaction("zb"));g.addEdge(z, b, zb);g.setEdgeWeight(zb, 8);
ab = new ReactionEdge(a,b,new BioReaction("ab"));g.addEdge(a, b, ab);g.setEdgeWeight(ab, 9);
@@ -91,6 +92,8 @@ public class TestSteinerTreeApprox {
ed = new ReactionEdge(e,d,new BioReaction("ed"));g.addEdge(e, d, ed);g.setEdgeWeight(ed, 5);
fe = new ReactionEdge(f,e,new BioReaction("fe"));g.addEdge(f, e, fe);g.setEdgeWeight(fe, 8);
df = new ReactionEdge(d,f,new BioReaction("df"));g.addEdge(d, f, df);g.setEdgeWeight(df, 8);
+ aw = new ReactionEdge(a,w,new BioReaction("aw"));g.addEdge(a, w, aw);g.setEdgeWeight(aw, 2);
+ dw = new ReactionEdge(d,w,new BioReaction("dw"));g.addEdge(d, w, dw);g.setEdgeWeight(dw, 2);
}
@@ -131,6 +134,21 @@ public class TestSteinerTreeApprox {
assertTrue("wrong path",Arrays.asList(expectedPath).containsAll(treeList));
}
+ @Test
+ public void testSteinerTreeListUndirected(){
+ HashSet<BioMetabolite> noi = new HashSet<>();
+ noi.add(a);noi.add(b);noi.add(c);noi.add(d);noi.add(e);
+
+ ReactionEdge[] expectedPath = {ey, yx, ay, aw, dw, cx, xb};
+ SteinerTreeApprox<BioMetabolite, ReactionEdge, CompoundGraph> steinerComputer
+ = new SteinerTreeApprox<>(g, true, false);
+ List<ReactionEdge> treeList = steinerComputer.getSteinerTreeList(noi,noi, true);
+
+ assertNotNull("No path found", treeList);
+
+ assertTrue("wrong path",Arrays.asList(expectedPath).containsAll(treeList));
+ }
+
// /**
// * Test the steiner tree sub graph.
// */
diff --git a/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java b/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java
index 7db0cb7d1..df1e0d41e 100644
--- a/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java
+++ b/met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/networkAnalysis/ExtractSubNetwork.java
@@ -106,7 +106,7 @@ public class ExtractSubNetwork extends AbstractMet4jApplication {
};
CompoundGraph subnet;
if (st) {
- SteinerTreeApprox<BioMetabolite, ReactionEdge, CompoundGraph> stComp = new SteinerTreeApprox<>(graph);
+ SteinerTreeApprox<BioMetabolite, ReactionEdge, CompoundGraph> stComp = new SteinerTreeApprox<>(graph,(degree || weightFile != null), !undirected);
List<ReactionEdge> stEdges = stComp.getSteinerTreeList(sources, targets, (degree || weightFile != null));
subnet = factory.createGraphFromEdgeList(stEdges);
} else if (k > 1) {
--
GitLab