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All scripts concerning GBS analysis

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742

A gene finding software for eukaryotic and prokaryotic organisms.

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

Code and workflows for the analyses reported in “Dici: a novel DNA transposon reshaping the genome of the opportunistic yeast Diutina catenulata”

Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics

Modified of the code CleaveLand to have the results for all isoforms. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Addo-Quaye C &. Bioinformatics.

"clariTE.pl" is a program that post process the xm output file of RepeatMasker.