R

R

xaaxaam is a set of scripts, written in R and python, aiming at producing high-resolution land-use maps from multi-sensors satellite imagery and ground-truth polygons.

Learn how to build a shiny application

Learn how to build a shiny application

R-Toulouse website

The 'rsiwaa' R package provides an API to help using, in R language, a Siwaa tool or a Siwaa workflow. It allows to upload input files, run the tool or the workflow, survey the running progression, and finally download output files.

R script to manipulate peptide quantification data

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel

Cette application permet l'exploration, l'interrogation, la visualisation et l’interprétation fonctionnelle d'un ensemble pre-processé de données épigénétiques (ATAC-seq) correspondant à la régulation temporelle des réseaux de transcription pendant la régénération des axones du système nerveux central chez le poisson zèbre.

https://rosetta.sk8.inrae.fr

R package to run MuSICA

This repository contains the scripts used to produce the experiments presented in

Jorge E., Hocking T.D., Neuvial P., Vialaneix N., and Foissac S. (2025) Posthoc inference for interpretable Hi-C differential analysis. preprint

These experiments aims at illustrating the use of the R package hicream that performs differential analysis of Hi-C data.

Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"

Développement d’une petite application Shiny et déploiement de celle-ci avec sk8, animé par Amandine Velt (SVQV) et Joseph Tran (EGFV) [AG CATI BARIC La Rochelle, 26-28/03/2024]

slides: https://joseph.tran.pages.mia.inra.fr/quarto-shiny-sk8

tutoriel: https://forgemia.inra.fr/joseph.tran/shiny-tutorial

Développement d’une petite application Shiny et déploiement de celle-ci avec sk8, animé par Amandine Velt (SVQV) et Joseph Tran (EGFV) [AG CATI BARIC La Rochelle, 26-28/03/2024]

slides: https://baric.pages.mia.inra.fr/quarto-shiny-sk8

tutoriel: https://forgemia.inra.fr/baric/shiny-tutorial

R script to compute trees cartesian coordinates from field measures in polar coordinates.

Atelier développement d’une application interactive Shiny lors du hackathon inter-CATI omics 2020

https://metatoul.pages.mia.inra.fr/graphstats

FreezeR is a R package which implements a Bayesian model aiming at deciphering main drivers of tree buds freezing.