R

R-package

FreezeR is a R package which implements a Bayesian model aiming at deciphering main drivers of tree buds freezing.

Landscape Epidemiology and Evolution R package

Docs

CRAN

Shiny app || Shiny Multi app

R package to compute Sentinel-2 Nadir BRDF Adjusted Reflectance

Documentation

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

F3MR is a R package that help to analyze food microbiome omics data based on dedicated and curated metabolic modules based on extensive literature review. It belongs to F3M software suite developed by INRAE Food Microbial Ecology lab

R package to run MuSICA

The goal of this package is to help users in using Capsis software and compile reports for field workshops. The workshop consist in predicting management effects on forest stand with Samsara2 model within Capsis platform.

http://martelosim.lessem.forge.inrae.fr/

PatHways lOngitudianal and diffErential aNanlysis in metabolomICS (PHOENICS). Perform differential analysis of metabolic pathways based on longitudinal metabolomics data.

This project is the source repository of the CRAN package 'SOMbrero' https://cran.r-project.org/package=SOMbrero.

The stochastic (also called on-line) version of the Self-Organising Map (SOM) algorithm is provided. Different versions of the algorithm are implemented, for numeric and relational data and for contingency tables as described, respectively, in Kohonen (2001) isbn:3-540-67921-9, Olteanu & Villa-Vialaneix (2005) doi:10.1016/j.neucom.2013.11.047 and Cottrell et al (2004) doi:10.1016/j.neunet.2004.07.010. The package also contains many plotting features (to help the user interpret the results), can handle (and impute) missing values and is delivered with a graphical user interface based on 'shiny'.

Paquet wapt pour installer la config de Firefox.

Paquet wapt pour l'installation de Global-Protect.

shinySbm is a package containing a shiny application. This application is build for network analysis based on the sbm package made by Chiquet J, Donnet S and Barbillon P (2023) CRAN. It allow to apply and explore the outputs of a Stochastic Block Model. It is useful if you want to analyse your data (could be adjacency matrix or edges list) without R language knowledge or to learn the basic lines of the sbm package.

https://metatoul.pages.mia.inra.fr/graphstats

Analyse mark-release-recapture data from Sterile Insect Technique (SIT) field experiments. https://umr-astre.pages.mia.inra.fr/sit

Requirements and design of a R package for analysing data from Mark-Capture-Recapture experiments for the effective management of invasive Aedes mosquitoes.