Explore projects

scripts to remap markers as pairs of bait sequences or context sequences.

OpenFLUID framework and applications

This project is the source repository of the CRAN package 'hicream' https://cran.r-project.org/package=hicream.

It performs Hi-C data differential analysis based on pixel-level differential analysis and a post hoc inference strategy to quantify signal in clusters of pixels. Clusters of pixels are obtained through a connectivity-constrained two-dimensional hierarchical clustering.

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

An end-to-end deep learning solution supporting multiple model architectures with advanced features for training, evaluation, and production-ready inference.

Galaxy wrappers for FROGS

Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"

Experimental data vizualization for FAANG.

Visualisation de données métagénomiques.

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).

Nextflow pipeline to extract syntenic blocks using the MCScanX program.

XyDyS (Xylogenesis Dynamics Simulator) is a software for interactive exploration of computational models of wood formation.

mechanistic-statistical environment

https://msegrp.pages-forge.inrae.fr/mse