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Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

https://umr-astre.pages.mia.inra.fr/sit-methods/

Code storage Area of the RECORD Project packages.

A demo-genetic individual-based model for Atlantic salmon populations

Life game (Conway) using vle::discrete_time cells and vle.generic.builder Builder model to generate cells and their connexions

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.

CarthaGène is multi-population genetic/radiated hybrid mapping software. CarthaGene looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms.

Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

MineXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to visualize mass spectrometric data in their full MS^n depth. Sophisticated mouse-driven mass data integrations are easily performed. It is the continuation of mineXpert2, ported to the rewrittent libXpertMass and libXpertMassGui libraries.