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Pan1c: a Snakemake workflow to build chromosome level pangenomes.

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

Code storage Area of the RECORD Project packages.

Free-D libraries: a collection of C++ libraries

A demo-genetic individual-based model for Atlantic salmon populations

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

CarthaGène is multi-population genetic/radiated hybrid mapping software. CarthaGene looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms.

https://umr-astre.pages.mia.inra.fr/sit-methods/

mechanistic-statistical environment

https://msegrp.pages-forge.inrae.fr/mse

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Source code of BIP software (Biological Image Processing)